CANTATAdb - search

Detailed information on CNT30570366

BLAST search results

BLAST vs Swiss-Prot:
sp|Q08298|RD22_ARATH, E-value = 5e-34

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30318042	Vitis vinifera	Corylus avellana	11.79	28.44	88.33	60	forward
CNT30152079	Vitis vinifera	Prunus persica	16.31	21.45	85.54	83	forward

Expression of CNT30570366

Peptides detected in this lncRNA

>peptide 1 (57 aa)
MDSSEVAQYFSSPLIPGSSHSLIVFLIVSASSDSGFIENSFRISGNFLDEKGMELAT*

>peptide 2 (48 aa)
MLSLVACVNRYSSFADANSGATSRFSFSCVNIYPSAFAHPDSGAASGFA

Sequence

>CNT30570366
CCGGGGTTTCCTTCTCCACCTCTGTTGAAATCACCTGAACACCTTTTCCAAGCTTTGAGGTGCTGAAATCAACCATGGATTCTAGTGAAGTTGCACAATA
CTTTTCCTCTCCTTTAATCCCAGGCTCCTCACACTCTCTGATTGTGTTCTTGATTGTCTCAGCTTCTTCTGATTCTGGTTTTATCGAGAACTCGTTCAGA
ATTTCTGGGAATTTTTTGGATGAAAAAGGTATGGAGTTGGCAACTTGACGAGGCAAGAAGAAAAGAGCTACATTTGGATCATCATGGAGCTGATCCTCAG
TAGCAGCATACTTGTAATCGAAGGGTGATTTACTTTTCCCTTTACCAACACCAACATATACATGCTTTCCCTTGTGGCCTGCGTTAACAGATACTCCTCC
TTTGCCGACGCCAACAGTGGTGCCACCTCCAGGTTTTCCTTTTCCTGCGTGAACATTTACCCCAGTGCCTTTGCCCACCCCGACAGTGGTGCCGCCTCCG
GATTTGCCT