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Detailed information on CNT30570244


BLAST search results

BLAST vs Swiss-Prot:
sp|Q66PF3|UFOG3_FRAAN, E-value = 1e-127

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3023789Vitis viniferaPopulus trichocarpa17.7427.1781.33166forward

Expression of CNT30570244

Peptides detected in this lncRNA

>peptide 1 (35 aa)
PPFVKAFMHFSFIFALFILMLLLSSIKLLILLLIS*

>peptide 2 (47 aa)
MDPPPSLSTAVAGKTRAGTELTKPGTTNSASESANSVTSTPWWSLRV*

Sequence

>CNT30570244
CCACCTTTTGTCAAGGCCTTCATGCACTTTTCTTTCATTTTTGCCCTTTTCATTCTAATGTTGTTGCTATCATCCATTAAACTCCTTATTCTACTCTTAA
TTTCTTGAGCACTTACAAGATTACTAGTATTCATGTTATAATCAAATCTAATCTCTACCCCCATTTCTAACTCTCTTACTATTTGAAACGCATTCAATTA
TTGTTCTGCATACATAGGCCATGTAGCTACCGGGACGCCATACCATATGCTCTCTAATGTAGAATTCCACCCACAATGAGATACAAACCCTCCTATTGCA
GAGTGAGCTAAAATAGCCGTTTGTGGTGCCCATCCAATTATCTTTCCAATTTTAGATGTACGATCTAAGAACCCTTCAGGTAGTACTTCCTCGAAATTCA
CATAATCAGTAGGCATTGCGATCTTACCTTTTGGTGGAGGTCGTCGGAGCGTCCACAAGAAACGATGCCCACTATTCTCAAGCCCAATTGCAATTTCTTT
GATTTGATCCATGTGGAATGCTCCAACGCTGCCAAAACATAAAAACACCACAGATGATGTGGGTTGATCATCAAGCCATTGGATGACATCCAAGTCACTA
TCTTGTTTCTGGTGATTGGCATTATGTAAGTTCAATAACGGCCCCACTGTGTAAATGGGAGGAGTTGTACCATCGACAAAGGAGTTAATCACATGAGATT
CTAGCTCCACAAACGTATTTACCAAAATACCCTTGGCCTCTCTAAACCTCCTTACCCGGTTGAGGAAATCCATGGATCCGCCACCCTCCTTGTCCACCGC
CGTAGCAGGCAAGACTCGAGCAGGAACCGAGTTGACAAAACCCGGGACCACCAACTCAGCATCCGAGTCAGCAAACTCAGTAACATCCACGCCCTGGTGG
TCCTTGAGGGTTTGAAGATGAAACAGGAGAGCCAGG