Detailed information on CNT30570089


BLAST search results

BLAST vs Swiss-Prot:
sp|Q41773|VATL_MAIZE, E-value = 2e-11

BLAST vs NONCODE:
NONVVIT002951, E-value = 2e-123

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30163577Vitis viniferaPistacia vera6.5122.4381.15122forward
CNT30234658Vitis viniferaBrassica oleracea7.4734.4882.14140forward
CNT30172189Vitis viniferaTrifolium pratense6.3524.6481.51119forward
CNT30314232Vitis viniferaCamelina sativa7.0936.6486.47133forward
CNT3037338Vitis viniferaCucumis melo5.8727.3681.82110forward

Expression of CNT30570089

Peptides detected in this lncRNA

>peptide 1 (85 aa)
HKNQEIVQIICINLPKLNEHKHFILADKLNPTSTNNRTERLFWSTNFHYENIGEPCKCSPTTADLRRIKLFSSQNVTNERYKNTG*

>peptide 2 (83 aa)
MSTSILFLQINSILLLQITEQKDCFGALTSIMKTLVNPASAHQPLLISEELSYFLPKMLPMNDTRILGSTVPFLFCSGLASSG*

>peptide 3 (61 aa)
MSIDACVASNLHKTYIKTPWSHKQIDELDKAISSFSQAHLNIPYSSCNVTGALTISNIKRNH

>peptide 4 (61 aa)
MAKYLIENNLIIKRGGKKMTVTIKRWLNKEAYCFYTFGFFDKGVVEPEIRSRSLSINQIEF*

>peptide 5 (59 aa)
MFIICFRYQTYKWQKTIFGDIKATMQEKAQGECIIPVKFQQNKYNNTTLKCIQFCLRIP*

>peptide 6 (36 aa)
MPTIRPYRASASAKMRMRIIPTKSLGCCALALQNKS*

Sequence

>CNT30570089
CACAAGAACCAAGAAATTGTTCAAATTATATGTATAAACTTGCCAAAGTTAAATGAGCACAAGCATTTTATTCTTGCAGATAAACTCAATCCTACTTCTA
CAAATAACAGAACAGAAAGATTGTTTTGGAGCACTAACTTCCATTATGAAAACATTGGTGAACCCTGCAAGTGCTCACCAACCACTGCTGATCTCAGAAG
AATTAAGTTATTTTCTTCCCAAAATGTTACCAATGAACGATACAAGAATACTGGGTAGTACAGTCCCTTTCTTATTCTGCTCTGGACTGGCCAGCTCGGG
ATGACAAGATAATGCCAACAATAAGGCCGTATAGGGCCAGTGCTTCAGCAAAGATGAGAATGAGGATCATACCAACAAAAAGTTTAGGCTGCTGCGCATT
AGCCCTGCAAAACAAATCATAGATTCAAATTATGATTAGTCCTACTAACAAAGAATTTGTCCTCAGCCAAAGCAACTTATCCTAAAGTCGTCCAAAGTAC
AGTCTGAAGAAATTAAAAACTGAAAGAAATAAAGAAAGAAGACAAATTTTAGACCAAAAAAGGAAAGAGAGAAATTGAAAACAAGCTGCCTGTTTAAACA
TCTGTCTGCTAACAAATTTTTACTTCCACATGGAGCTTTAGGTTATGTTTGGTTCCCGGAATGCACCAAGGAAAGAAAAAAAATGCAAAGAAAAATGATT
TTCTCATGTTTGGTTTTACTATAATTTTTTTTTTTAAAAATTAAATATAATTAAAATTAGTTAGAAATTTATACATTTTAAAATTATTTAATCTTTATAT
AACGGAGGAAATGAAGTGAAATGTGTTTGATGAAACATATAAAAATAATTTATTAATTTTAAACTTATTTTTTATTTTCCTTCATTTTTTCTTTCCTTCC
ACTTTTCCTCTTTATTTTTTTTCCCTCACATTTTCCCTCAAATTTTCCGAGAACCAAACATAGTCTTAATGATTTTCTTTAAGAGCATTTCTGGAAGTGT
TTCTAAAGAAAGCGCCACAAACTAAGAGAACCTTATAACCAGAATCACTCTTTTTTCTAAACGTGCTCTAAATATGTTTATTATTTGTTTCAGATATCAA
ACTTACAAGTGGCAGAAAACAATTTTTGGGGATATAAAGGCTACAATGCAAGAAAAGGCACAAGGAGAATGCATCATTCCAGTAAAATTTCAACAAAATA
AATATAATAATACAACATTAAAATGCATTCAATTCTGCTTGCGCATACCCTAAAACCAAATATAGAGGGAACATAATTAATGGCAAAATATCTAATAGAA
AACAATTTGATTATTAAACGAGGGGGAAAGAAAATGACAGTAACAATTAAAAGGTGGCTGAACAAGGAGGCTTATTGTTTTTACACTTTTGGCTTTTTTG
ACAAAGGTGTTGTAGAACCAGAGATCAGGTCCAGGTCGCTCTCAATCAACCAAATCGAATTTTAAAGCTGATTTCCACCCAGTTAGGACTGAGGCATAAC
CTCAGAAATCCAACATGATAATACTCAAAAGGAAAAAGGAATTCAAACATTTACACTTGCAAATCTCTAATCGTAATAAACCCAAATAAAAACAAACGTT
TCAAAATCAAATTAAAATCGCACTTGAACTCCTAATTCTCCACAATTTCAATTCAGAACCTCGAGATTAGCACATAGGTGATAGTCCCATGTCCATTGAT
GCATGTGTTGCTAGTAATTTACATAAAACATATATCAAAACACCATGGTCTCATAAGCAAATAGATGAACTTGATAAAGCCATTTCAAGTTTCAGCCAAG
CCCATCTCAACATACCATATTCTTCATGTAATGTCACAGGCGCGTTAACAATATCAAACATCAAACGAAACCACC