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Detailed information on CNT30568722


BLAST search results

BLAST vs Swiss-Prot:
sp|P0CH33|UBQ11_ARATH, E-value = 7e-151

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3033564Actinidia chinensisTheobroma cacao51.5467.6283.8685forward

Expression of CNT30568722

Peptides detected in this lncRNA

>peptide 1 (48 aa)
ANIRNTTRCLYLSNITSETKHPTRTKSLQKSPPRRRRTRWSVDSFWML*

>peptide 2 (40 aa)
MNKFNKFNIQNPKIITNIHRLIQKTGVEKMYKSNKFNIQK*

>peptide 3 (40 aa)
MPSLSWILALTLSIVSELSTSRVMVLPVRVFTKICICKSQ*

Sequence

>CNT30568722
AGCAAACATAAGAAACACTACTAGATGTCTTTACTTAAGCAACATCACTTCAGAAACTAAGCACCCAACAAGAACCAAAAGCCTTCAGAAATCGCCACCG
CGGAGACGAAGAACAAGGTGGAGTGTTGATTCCTTCTGGATGTTGTAATCGGCAAGAGTACGGCCATCCTCCAACTGCTTTCCGGCAAAGATCAGACGCT
GTTGATCCGGAGGAATACCTTCCTTGTCTTGGATCTTCGCTTTCACATTATCAATTGTATCAGAGCTCTCAACCTCAAGAGTGATTGTCTTTCCAGTTAG
GGTCTTTACAAAGATCTGCATTCCTCCACGGAGGCGGAGGACAAGGTGGAGGGTGGACTCCTTTTGGATGTTGTAGTCCGCAAGAGTACGGCCGTCCTCG
AGCTGTTTTCCGGCGAAGATCAGGCGCTGCTGATCCGGAGGAATACCTTCCTTGTCTTGAATTTTGGCCTTGACATTATCAATTGTATCTGAGCTCTCGA
CCTCGAGCGTGATTGTCTTGCCAGTTAGGGTTTTTACGAAGATCTGCATGCCGCCGCGGAGTCGGAGCACGAGGTGGAGGGTGGACTCCTTCTGGATGTT
ATAGTCCGCAAGAGTGCGGCCATCCTCGAGCTGTTTTCCTGCGAAGATCAGACGCTGCTGATCCGGAGGAATGCCTTCTTTGTCCTGGATTTTGGCTTTG
ACGTTGTCGATCGTGTCGGAGCTCTCGACCTCGAGAGTTATGGTCTTGCCGGTTAGGGTTTTCACGAAGATCTGCATCTGTAAATCGCAATAACAAAAAT
CAGATACAGTGATTGGTGATTCAATTAAGCCAATATTCAAAGACACGAAATGATAGCAGATTCACAAAATAATGAAAGATCTTCAGAATAACAAATTCAG
AAAACTGGATCCGAGAGTATGACTAAATTCAATTAATTCAATATGCAAAAATGTAAAATAATAGCAGATCTCAATACTATCAGAACTTGAGAGATTAATA
CAGGAAACTGGAGTCGAGAAGATGAATAAATTCAATAAATTCAACATACAGAACCCCAAAATAATCACCAATATTCATAGATTAATTCAGAAAACTGGAG
TCGAGAAGATGTATAAATCCAATAAATTCAACATACAGAAGTAACAGAACCACAAAATAATCAACACAAAGCAAATTCAACATACAGAAACACAAAATAA
TCACAGGTCTTCAGAATAACAAATTCAGAAAACTGGATTGGAGATGATGACTAAATTCAATTAATTCAATATGCAAAAACACAAAATAATAGCAGATCTT
CAGAGATTAATACAGGAAACTGGAGTCGA