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Detailed information on CNT3056795


BLAST search results

BLAST vs Swiss-Prot:
sp|Q36284|NU5M_MAIZE, E-value = 5e-85

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30197509Amborella trichopodaPisum sativum54.3212.793.77289forward
CNT30182368Amborella trichopodaSecale cereale78.3820.5692.57417forward
CNT30299594Amborella trichopodaTriticum aestivum78.3855.1692.57417forward
CNT30220864Amborella trichopodaHordeum vulgare54.5121.5392.41290forward
CNT30388738Amborella trichopodaTriticum turgidum78.3864.5592.57417forward
CNT30586133Amborella trichopodaMusa acuminata54.3213.0787.2289forward
CNT30147395Amborella trichopodaMedicago truncatula54.326.893.77289forward
CNT30437984Amborella trichopodaAegilops tauschii49.4469.5892.02263forward
CNT30467405Amborella trichopodaSaccharum spontaneum78.3825.7292.33417forward
CNT30210175Amborella trichopodaHelianthus annuus70.4999.7390.4375forward
CNT30627916Amborella trichopodaDaucus carota54.328.0194.12289forward
CNT30427311Amborella trichopodaPapaver somniferum80.8311.6891.16430forward
CNT30574574Amborella trichopodaVitis vinifera54.328.5994.46289forward
CNT30104639Amborella trichopodaOryza rufipogon54.5126.4192.41290forward
CNT30577102Amborella trichopodaOryza barthii16.1737.8993.0286forward
CNT30115468Amborella trichopodaOryza nivara75.1911.5993400forward

Expression of CNT3056795

Peptides detected in this lncRNA

>peptide 1 (34 aa)
MIVGSTLKLTYSLGQSSECVRYAIRAQYLNSTFV*

>peptide 2 (37 aa)
LKRKKRRKQTGSWHMLLAYQAILATPVLFIFHLDFLL*

>peptide 3 (41 aa)
MELDQVTLQRHNDSRIHFEVDLFARPIVGMCTICHKGPISQ*

>peptide 4 (55 aa)
PKKKEEKETNWELAHVACLPSHPGNSSSIYFSSGLLIIKTTNYRNERRSIIYPRR*

Sequence

>CNT3056795
ACCTAAAAAGAAAGAAGAGAAGGAAACAAACTGGGAGTTGGCACATGTTGCTTGCTTACCAAGCCATCCTGGCAACTCCAGTTCTATTTATTTTTCATCT
GGACTTCTTATTATAAAAACTACAAACTATCGAAATGAAAGACGATCGATTATCTACCCAAGAAGATAGAGAATCCCACATATGAGAAAAGGTCACAAAT
GGAGTTGGACCAAGTAACATTGCAAAGGCATAATGATAGTAGGATCCACTTTGAAGTTGACTTATTCGCTCGGCCAATCGTCGGAATGTGTACGATATGC
CATAAGGGCCCAATATCTCAATAGCACCTTTGTCTAAAGCTTCGAGTGAGACTTCATATCCAAAACACAAGAACGATCTGACTAGAAAGTAATTATAAAC
TTGATCGAAGAACCAACGTTTATTGAAGAAGCAATAAAGTCGATTACAAAAAGTGCTAGTTTGAAAGGTTCGTTGGAATTGATCCACTACGGGATTTACA
TTATATGCTACAGAAGCACCTGAAGTACTAAA