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Detailed information on CNT3056786


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30619448Amborella trichopodaSesamum indicum25.7917.8490.15203forward
CNT30541214Amborella trichopodaBrassica napus9.424.3494.5974reverse complement
CNT30439823Amborella trichopodaAegilops tauschii16.3928.8692.25129reverse complement

Expression of CNT3056786

Peptides detected in this lncRNA

>peptide 1 (46 aa)
MIVGESPLTASPNILSFTTSWGVYRRSQRLARKGCLLDYIYYTLVD*

>peptide 2 (34 aa)
MNEDPYVYYLRKKFSYSISLFLSIDVSGVQYNTI*

>peptide 3 (32 aa)
MGYMVEGCLHPKAMIYPIVHRDLVAYYRRDFC*

>peptide 4 (55 aa)
PKKKEEKETNWELAHVACLPSHPGNSSSIYFSSGLLIIKTTNYRNERRSIIYPRR*

>peptide 5 (37 aa)
LKRKKRRKQTGSWHMLLAYQAILATPVLFIFHLDFLL*

Sequence

>CNT3056786
ACCTAAAAAGAAAGAAGAGAAGGAAACAAACTGGGAGTTGGCACATGTTGCTTGCTTACCAAGCCATCCTGGCAACTCCAGTTCTATTTATTTTTCATCT
GGACTTCTTATTATAAAAACTACAAACTATCGAAATGAAAGACGATCGATTATCTACCCAAGAAGATAGAGAATCCCACATATGAGAAAAGGTCACAAAT
GGAGTTGGACCAAGTAACATTGCAAAGGCATAATGATAGTAGGGGAATCTCCACTCACTGCTTCCCCTAATATCCTCTCTTTTACCACATCATGGGGGGT
TTACAGGAGATCCCAGAGGCTTGCTCGGAAAGGCTGCTTGCTAGACTATATTTATTATACTCTAGTAGACTAGATTAGACTATACTATACTAGACTCTAA
TAGTCACTAGACTCACTCACTATAGTAGTCCGTCCGGTTGCTCTTGCTGAAATCATTACTCTTCATTCTCCTGTGCTCTAGCAATTGTGCTCCCTATACC
ACTACCAGGTAGCGACAATCAATCTGTAGTGACGGGAATCTAGGAATGAATGAGGATCCCTATGTATATTATCTTAGAAAGAAGTTTTCATATTCAATTT
CTCTCTTTCTCTCAATAGATGTCTCTGGGGTACAGTACAATACGATATGATGGAATGCAATGGGATATATGGTAGAGGGCTGCTTGCACCCAAAAGCGAT
GATTTATCCCATTGTCCATAGGGACCTCGTGGCATACTACCGCCGCGACTTCTGCTAGATAGCTGCCCCTTTCTCTCTTTTTATAGC