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Detailed information on CNT30567580


BLAST search results

BLAST vs Swiss-Prot:
sp|P17598|CATA1_GOSHI, E-value = 8e-93

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30516671Actinidia chinensisJuglans regia60.664.7485.81303forward
CNT30501026Actinidia chinensisCoffea canephora67.622.1381.66338forward
CNT30282683Actinidia chinensisChenopodium quinoa44.824.3284.82224forward
CNT3070085Actinidia chinensisQuercus suber2015.3489100forward
CNT3098188Actinidia chinensisSolanum tuberosum29.429.6480.95147forward
CNT3085325Actinidia chinensisVigna radiata39.227.7287.24196forward
CNT30313019Actinidia chinensisCamelina sativa49.640.5281.05248forward
CNT30260467Actinidia chinensisBrassica rapa28.434.0586.62142forward
CNT30475173Actinidia chinensisSaccharum spontaneum3724.983.24185forward
CNT301996Actinidia chinensisZea mays28.232.3484.4141forward
CNT30654455Actinidia chinensisRosa chinensis49.654.2785.89248forward
CNT3022395Actinidia chinensisPopulus trichocarpa35.843.5589.39179forward

Expression of CNT30567580

Peptides detected in this lncRNA

>peptide 1 (36 aa)
GRRQAAHSLQRSYQCSCLTPSDPQVAGAKYPRAKSW*

>peptide 2 (45 aa)
MCKLSGWWEKKSRILQFSWICDFGLGLRAWTMSGNFIPSRMKKTGK

>peptide 3 (62 aa)
GQKASCSFSAKKLSMFLFNTKRPTGCRGKISSGQVLVTSSGSKSNLSSWSGSIVWMKSFHSG*

Sequence

>CNT30567580
GGGCAGAAGGCAAGCTGCTCATTCTCTGCAAAGAAGTTATCAATGTTCTTGTTTAACACCAAGCGACCCACAGGTTGCAGGGGCAAAATATCCTCGGGCC
AAGTCTTGGTAACATCAAGTGGGTCAAAGTCAAATCTGTCTTCATGGTCAGGATCAATTGTCTGGATGAAAAGCTTCCACTCAGGATAGTTACCAGACGC
AATTGAGTCGTAAAGATCCTGGGTGGCATGGCTGTGATTTGATCCTCCGACCCTAACCGACTCCTCCTCCAACAAGCATTTTACTCCACAAGTAGGTTTC
CAGTGAAACTTCACGTAATGTGCTTTACCGACCTTGTTGATTAGAGTATAGGAAAGTGAACATGTGCAAGCTTTCTGGGTGGTGGGAGAAGAAGTCGAGG
ATCCTCCAATTCTCCTGGATATGCGACTTCGGGTTGGGTTTGAGAGCATGGACCATGTCAGGGAACTTCATCCCATCACGGATGAAGAAGACTGGGAAAT