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Detailed information on CNT30567424


BLAST search results

BLAST vs Swiss-Prot:
sp|Q8H1E4|RAP24_ARATH, E-value = 1e-28

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30702960Actinidia chinensisQuercus lobata16.5732.7882.73139forward
CNT30488421Actinidia chinensisOlea europaea16.2130.9888.24136forward

Expression of CNT30567424

Peptides detected in this lncRNA

>peptide 1 (48 aa)
MSRARAGSGSWANGSPRPTFPSASASPLCKASWALGDSPLASWGRALG*

>peptide 2 (39 aa)
MGRGSKTLEKRIGLSSWSNRLGKKRAGQKQRQRQGERES*

>peptide 3 (48 aa)
SSSVKSGNTRSDIGEDPPDPSLSDTIGDPEFEAELSTSDSVGGGGWGN*

>peptide 4 (52 aa)
ILLREVWKHKIRHRRRPSRPIALRHHRRPRVRGRVVYLRLGRRRRLGKLSLA*

Sequence

>CNT30567424
GATCCTCCTCCGTGAAGTCTGGAAACACAAGATCCGACATCGGCGAAGACCCTCCCGACCCATCGCTCTCAGACACCATCGGCGACCCCGAGTTCGAGGC
AGAGTTGTCTACCTCAGACTCGGTCGGCGGCGGAGGTTGGGGAAATTGAGCCTCGCGTAGTCGCCTCGGAGCTTGTACGCCGCCTTGTCGTAGGCCAGCG
CCGCCTCCTCGGCGGTGTCGAATGTCCCGAGCCAGAGCCGGGTCCGGTTCTTGGGCAAACGGATCTCCGCGACCCACTTTCCCCAGTGCCTCTGCCTCAC
CCCTCTGTAAAGCTTCGTGGGCTTTGGGGGATAGCCCGCTTGCTTCATGGGGACGGGCTTTGGGCTGAGGAAGCTCAGGCTCTGGTGCTGCTGGGTCCAG
GAGGGTTGTTGGAATTGGATCTGGGCTTGAATCTGTTGGATCTGGTTTTGGGTCAAGTGATTGAGGCCCACCAAGCCCGGTTGCTCCAGACCTAATGGGT
CGTGGGTCGAAAACCCTTGAGAAAAGAATTGGGTTGTCGAGCTGGAGCAACCGTCTGGGTAAGAAACGGGCTGGGCAGAAACAGAGACAGAGACAGGGGG
AGAGGGAGAGTTAGAATAGGAGGTAGAGAGAGAAGGGGATGAGAGAGAGGGAATTGTTGGGGAAGCACTTTTGATAAAAGGTTCAAGTGCTCCCATGAGC
TCATCGCCCCTGAAGAGGTCTGAATCTGATTGAAATGGTGTGCTACTCCATAAATCCATTGCAGCTGCCATTCCTGTCTCCAAAACTTTACAAAAACAAA
ACCTGTTTCTCAAACTAAAATCACAAGAACAGGTGAGAA