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Detailed information on CNT30567058


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30674046Actinidia chinensisSetaria viridis36.9422.3587.97133forward
CNT30515355Actinidia chinensisJuglans regia34.4420.1687.1124forward
CNT30525458Actinidia chinensisPhaseolus vulgaris25.565.0785.8792forward
CNT30629575Actinidia chinensisVigna unguiculata23.0620.2484.3483forward
CNT30304990Actinidia chinensisTriticum aestivum16.9424.388.5261forward
CNT30400439Actinidia chinensisTriticum turgidum31.9443.490.43115forward
CNT30588696Actinidia chinensisMusa acuminata35.2847.2190.55127forward
CNT30443761Actinidia chinensisAegilops tauschii31.9424.2189.57115forward
CNT30256504Actinidia chinensisAvena sativa37.7831.6388.97136forward
CNT30669889Actinidia chinensisTriticum dicoccoides16.9424.0286.8961forward
CNT307903Actinidia chinensisZea mays37.7835.4287.5136forward
CNT30609040Actinidia chinensisGossypium raimondii33.0625.8789.08119forward
CNT30344601Actinidia chinensisEragrostis tef37.2222.2287.31134forward
CNT30360105Actinidia chinensisLactuca sativa32.2213.1881.9116forward
CNT3034379Actinidia chinensisTheobroma cacao29.7213.7290.65107forward
CNT3058384Actinidia chinensisAmborella trichopoda34.7226.2183.2125forward
CNT3037808Actinidia chinensisCucumis melo33.8916.7482.79122forward
CNT30102128Actinidia chinensisOryza rufipogon37.7823.4988.24136forward
CNT30576871Actinidia chinensisOryza barthii37.7815.8188.24136forward
CNT30580093Actinidia chinensisEchinochloa crusgalli37.7817.5586.76136forward
CNT30497042Actinidia chinensisDigitaria exilis37.7817.1187.5136forward
CNT30551312Actinidia chinensisOryza brachyantha37.7812.8887.5136forward

Expression of CNT30567058

Peptides detected in this lncRNA

>peptide 1 (57 aa)
AERVEGSTGVLLLLRVLLHAALVLHEGDGEEFDDQDGREGPPRHRLSQVGGGSSTAV*

>peptide 2 (48 aa)
PSGSKAPPGYFFFSVSFSMLRWCSTKAMARNSMTRMVGRVPHGTGCPK*

>peptide 3 (33 aa)
SRAGRRLHRGTSSSPCPSPCCVGAPRRRWRGIR*

Sequence

>CNT30567058
AGCCGAGCGGGTCGAAGGCTCCACCGGGGTACTTCTTCTTCTCCGTGTCCTTCTCCATGCTGCGTTGGTGCTCCACGAAGGCGATGGCGAGGAATTCGAT
GACCAGGATGGTCGGGAGGGTCCCCCACGGCACCGGTTGTCCCAAGTAGGTGGTGGAAGCAGCACGGCGGTTTAGAAGCGGCAAGGCAGCGCATTTAGAC
TTGGAAGGAGACTGGATTGACGGGCGGAGGACGGCGGCCATGCCGTAGCTCATCAGTGTATTGGAGGCCATGGCTAGCTCAGAGTTGGAGATATTTCTGA
GAATAGCCTAGAGACAGAGAGAGAGAGGGTTGTGGGAGAAGAAGGGGCATGAGATTGTAC