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Detailed information on CNT30565935


BLAST search results

BLAST vs Swiss-Prot:
sp|O65660|PLAT1_ARATH, E-value = 5e-54

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30523732Actinidia chinensisSetaria italica28.427.3888.41138forward
CNT30549214Actinidia chinensisIpomoea triloba50.4136.5181.22245forward
CNT30441862Actinidia chinensisAegilops tauschii25.113.9184.43122forward
CNT30243815Actinidia chinensisAvena sativa20.7833.8986.14101forward
CNT30463851Actinidia chinensisSaccharum spontaneum28.423.2787.68138forward
CNT30228519Actinidia chinensisAnanas comosus20.9913.2384.31102forward

Expression of CNT30565935

Peptides detected in this lncRNA

>peptide 1 (46 aa)
SPKDNHEIVARLQQSNTTQSRSKTKNVAHEVKLFTRRKQLEGHPDR*

>peptide 2 (92 aa)
MSTGGFTVVPNGSELIWRGVGGEPLLDGEELLRAVLVGPSGGDLDVVAVPAVVWAGAVGGEVHGANRGIETRATSAKEVEVTPLKVVVAGAH*

Sequence

>CNT30565935
GTCTCCAAAGGATAACCATGAAATAGTAGCAAGGCTCCAACAATCAAACACCACTCAAAGCAGATCTAAAACAAAAAACGTGGCCCACGAAGTGAAGCTT
TTCACACGGCGGAAACAACTGGAGGGGCATCCCGACCGTTGACCACACTAACGCGATCACCCCGGAGATCATGAGCACCGGCGGATTTACAGTCGTTCCT
AATGGCAGTGAGCTCATATGGAGAGGTGTCGGTGGCGAGCCATTGCTCGACGGTGAAGAGCTTCTGAGAGCAGTCCTTGTGGGCCCCAGTGGTGGTGATC
TCGACGTAGTTGCAGTACCAGCCGTGGTGTGGGCCGGAGCCGTCGGAGGTGAGGTTCATGGCGCAAATCGGGGCATTGAGACAAGGGCCACGTCCGCTAA
AGAGGTCGAGGTTACCCCTCTCAAAGTAGTTGTAGCCGGTGCCCATTAGGCCTCCCCAGGCCTCGAGGTTAGGGATCCGAATCCCC