Detailed information on CNT30565697


BLAST search results

BLAST vs Swiss-Prot:
sp|Q8GU84|AB48G_ORYSJ, E-value = 5e-28

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30128918Actinidia chinensisCorymbia citriodora9.0338.5285.82141forward
CNT30706997Actinidia chinensisPrunus avium6.5921.6488.35103forward

Expression of CNT30565697

Peptides detected in this lncRNA

>peptide 1 (37 aa)
MDRPCRPLEMQKGRRLSKQLESPSSTTSTILGSSAMG*

>peptide 2 (35 aa)
MPKNKPKIMVMKNRIALYREFLQYDQCCFQKQALH*

>peptide 3 (67 aa)
EFVGKFYLKNSSITNTYANKESHQTKQSKRKQQMAKNTGAMVFFSPLTPLLRTSIRLFLECVKVNIF*

>peptide 4 (53 aa)
MRTQPTWAKTTGMRKSYSKPKNSLRKIFTVVGSSTPVITNGSSLSPTRDAKRP*

>peptide 5 (41 aa)
MARSQRDNHHSVHREVGEAHEYEVVEIKELDRCPFIPNHGV*

>peptide 6 (45 aa)
MLTKNHTKQSKVKENSKWQKIQGLWFSSLLSLLYLELVYAYFWNV*

>peptide 7 (42 aa)
MRKATLNTFLQLFRGKRQFFQLLQRFVLKKHWLLQGKGRQNR*

Sequence

>CNT30565697
CGGAATTTGTAGGGAAGTTTTATTTAAAGAATAGTAGTATTACAAATACATATGCTAACAAAGAATCACACCAAACAAAGCAAAGTAAAAGAAAACAGCA
AATGGCAAAAAATACAGGGGCTATGGTTTTCTTCTCTCCTCTCACTCCTTTACTTAGAACTAGTATACGCTTATTTTTGGAATGTGTAAAAGTGAACATC
TTCTGATCATCTCCTCTGGAAGTTAAGGTACTTGATTCCGTAAGCAAAGACGAAGAAGAAGATGAGGACCCAACCAACGTGGGCAAAAACCACCGGAATG
AGGAAGTCATATTCGAAACCCAAGAATTCTTTAAGGAAAATCTTCACCGTTGTGGGTTCTAGTACACCAGTAATTACTAATGGATCGTCCTTGTCGCCCA
CTAGAGATGCAAAAAGGCCGTAGACTGTCCAAGCAACTGGAGAGCCCCAGTAGTACCACCTCCACCATATTGGGATCATCTGCAATGGGTTGAGCATAAA
GTGTCATAATTTTGATTTAAGGTATATGAAATGTGACAAGAAATTATAAAGGTGGTTTTTGGATCACGAAAAATTATATGCATTAAAAAGTTTCTGAAAT
TTCACGTATGGCAATGTGAAAGTGAAAATCCTATTTAAGGTTAACTAGTAGATACATACCGGCCTCGTGACGATGTAACCGGAGAACAAGTTCCAGAAGT
TGAGGAAGAAGGACATGATAATGGCGGCAAATTGATGGCCAGGAGTCAACGCGACAACCATCATTCCGTACATCGAGAAGTAGGTGAAGCACATGAATAT
GAAGTAGTAGAAATAAAAGAACTTGACCGCTGTCCATTCATACCCAATCATGGAGTATAGAAGAAGAGCATAAATAATTGTCTGAACTACAACATAAATA
GTTTCTATGGCCACCTGAAAAAACCCAATGCCCGCGTCACTAATTTTCTCGGCGCAAAAAAGTGAATGTGCATTATATTACGGGGGTAGATAAATTCAAT
AAAATTATTTTTTTTGTTTTGTTTACCTGAGCAAATGCGTAAGGCAACTCTGAATACATTCCTGCAGCTCTTTCGCGGTAAAAGACAGTTCTTTCAACTC
CTACAACGGTTTGTACTGAAGAAGCATTGGTTGCTCCAAGGAAAAGGACGGCAGAATAGGTAGCTCCAAGCAAGTTAAGCAGGTCTTGTTGTTTGCTTCT
GTTTATGAAAATTATGCAAAAATAATCATTGTGATACTTAGATTGTATACGTTTTCTTGATTCTATTGTACGTAGATAATTGAAGATAGATATGTAGTGG
AGACTTACATTTTGTTTCCTTTTTTCCAGAAGAGGATGCCAAAGAATAAACCAAAGATAATGGTCATGAAGAATCGGATTGCATTGTACCGTGAGTTCCT
CCAGTACGACCAGTGCTGTTTCCAAAAACAAGCCTTGCATTGAGTTAAGAAGGGTTGGGAATATTGCGTGGGGAAGTAGAGGTCTCTGGCATCCGGTGCT
GGAGTGTTTAGCTCCTTGATAAGCTCCTGATTTCTCCTGGAGAAACAAAATCACGAGAAAGA