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Detailed information on CNT30565204


BLAST search results

BLAST vs Swiss-Prot:
sp|P13951|RBS_SINAL, E-value = 3e-37

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30317063Actinidia chinensisCorylus avellana28.4129.9380.35173forward
CNT30705707Actinidia chinensisPrunus avium28.915.6281.25176forward

Expression of CNT30565204

Peptides detected in this lncRNA

>peptide 1 (82 aa)
MKARRRVDDETDALDLALVVESDDTDERVGVFLLVRLDLSSHLSRIGTPIHGKLPHGPVPPIVVPWGVVVLTEEIVDAAMFG*

>peptide 2 (40 aa)
GQTEPFTFITNKTSISTAESSSVGDPMNKQTQYEKWKTTK*

>peptide 3 (34 aa)
MKLTHWTWRLLSNPMIRMNESGYSFLFASTSART*

>peptide 4 (32 aa)
PDRAFHIHHQQNINLYCRVLISWRSDEQANTI*

Sequence

>CNT30565204
GGCCAGACAGAGCCTTTCACATTCATCACCAACAAAACATCAATCTCTACTGCAGAGTCCTCATCAGTTGGAGATCCGATGAACAAGCAAACACAATATG
AAAAGTGGAAAACAACAAAATAGTTCAAAGTTTCGAACAGATAACATAAATCAAAAGGCTAAAGACAATCGCGGAACATGAAATTTATCCATGAAAGCTC
GGAGGCGTGTGGACGATGAAACTGACGCACTGGACTTGGCGCTTGTTGTCGAATCCGATGATACGGATGAACGAGTCGGGGTATTCCTTCTTGTTCGCCT
CGACCTCAGCTCGCACTTGAGTCGAATCGGTACACCCATACATGGGAAGCTTCCACATGGTCCAGTACCGCCCATCGTAGTACCCTGGGGAGTGGTGGTG
CTCACGGAGGAGATTGTTGATGCAGCCATGTTTGGTTGAGACTTGAGAGGACTAATAAGCTCTCTAGCCTTGCTCAAGATTTATAGACGCAAAATTCACA
ACACCAATTTTACCCACTTTATCACAATCCCTCCAAATCAATGGTCTATATTCGCCTGGTGGTATTGGACATTTATGGGTCATAAGATTCCAACAAGAAG
AGATTTTTG