Detailed information on CNT30565197


BLAST search results

BLAST vs Swiss-Prot:
sp|P26573|RBS_NICPL, E-value = 6e-39

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30535503Actinidia chinensisEucalyptus grandis16.7522.7182.14196forward
CNT30727187Actinidia chinensisCorchorus capsularis17.3525.9381.77203forward
CNT30402284Actinidia chinensisBeta vulgaris7.3539.2786.0586forward

Expression of CNT30565197

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MMRSLLKMEKTRHKSIKVYEPDSFILNVAHITS*

>peptide 2 (39 aa)
MPPRGEEASMRASRTSSFQVEATPALIQFHSNHHHHHQS*

>peptide 3 (34 aa)
MKLTHWTWRLLSNPMIRMNESGYSFLFASTSART*

>peptide 4 (82 aa)
MKARRRVDDETDALDLALVVESDDTDERVGVFLLVRLDLSSHLSRIGTPIHGKLPHGPVPPIVVPWGVVVLTVHKSFLKIKK*

>peptide 5 (54 aa)
MHLTLNPELRDPLSSFRPSEMAEGDLTPANGEAKEARVTEVTAEEEIVDAAMFG*

Sequence

>CNT30565197
TTTTAATTAAACCAGCAGTCATTAATTTTTTGTGAAGCTCCTCCTCATATTATTATATAGAAAATTTAAATTGAGAAAGAAAACACAGGCCAGACAGAGC
CTTTCACATTCATCACCAACAAAACATCAATCTCTACTGCAGAGTCCTCATCAGTTGGAGATCCGATGAACAAGCAAACACAATATGAAAAGTGGAAAAC
AACAAAATAGTTCAAAGTTTCGAACAGATAACATAAATCAAAAGGCTAAAGACAATCGCGGAACATGAAATTTATCCATGAAAGCTCGGAGGCGTGTGGA
CGATGAAACTGACGCACTGGACTTGGCGCTTGTTGTCGAATCCGATGATACGGATGAACGAGTCGGGGTATTCCTTCTTGTTCGCCTCGACCTCAGCTCG
CACTTGAGTCGAATCGGTACACCCATACATGGGAAGCTTCCACATGGTCCAGTACCGCCCATCGTAGTACCCTGGGGAGTGGTGGTGCTCACGGTACACA
AATCCTTCCTGAAAATCAAGAAATAGTAGGTAGTTAGTTCGTAAGCAGATAAGCGAAAGAATGATGCGATCACTACTGAAAATGGAAAAAACCCGTCACA
AATCCATAAAAGTTTATGAACCAGATTCATTCATTCTAAATGTAGCCCACATCACAAGTTGAATTCACACCACACTGAAATTGGTAATAGGAAGCAGCAG
ATAGAGCAAGAAGTTACCCCAACAGAGAACTCAATGCAAGGAATCCATCCCATGCGAATGAGGTAATCAATTTGCTTAAGCAATGCCTCCTCGGGGAGAG
GAGGCAAGTATGAGAGCGTCTCGAACTTCTTCTTTCCAAGTGGAGGCCACACCTGCACTCATCCAATTCCATTCCAACCACCACCACCACCACCAATCGT
GACTCTAAATCAAGCTCTATGTAAAACGAACAATAATAAAATTGATACCTTTATACTGTTTCATAATAATTACAGGGTATCGTGTAATTGAAACATACCT
GCATGCACTTGACTTTAAACCCAGAGCTACGAGATCCACTCTCGAGCTTTCGGCCCAGCGAGATGGCCGAGGGCGACTTGACGCCGGCGAACGGCGAGGC
CAAGGAGGCACGGGTCACGGAGGTAACCGCAGAGGAGGAGATTGTTGATGCAGCCATGTTTGGTTGAGAC