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Detailed information on CNT30565028


BLAST search results

BLAST vs Swiss-Prot:
sp|Q40478|ERF5_TOBAC, E-value = 1e-42

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30490814Actinidia chinensisOlea europaea26.3757.2581.82154forward
CNT30589662Actinidia chinensisMusa acuminata19.5221.5984.21114forward

Expression of CNT30565028

Peptides detected in this lncRNA

>peptide 1 (82 aa)
MGEAITAITEGCQRSPSCHPKRPSNLTESAEPRQRPRQPPPPPSLSSPLSSLSPRSHPPCTSSGEYPPVGKTLSSSQSREGS*

>peptide 2 (53 aa)
MALLPRSLNAARSYAFAASTAVSNVPSQTLAPLRFGSRISAANLPHGRLLTPR*

>peptide 3 (46 aa)
PLICTRRKTKPLLITSDLSPSGVPNFNKPRQTYPNVPFLNLVNSVR*

>peptide 4 (68 aa)
MSKIPFMSSQTAVQLDGVSGATAETPSASASAFSLFTSLLSLPSLSSSLHLFRRVSAGGKDSVELPIS*

Sequence

>CNT30565028
CCTCTTATATGTACAAGGAGAAAAACAAAACCCCTATTGATCACCTCAGACCTTTCGCCGTCAGGTGTTCCTAATTTTAATAAACCCCGTCAAACCTACC
CAAACGTTCCGTTTCTTAATTTAGTAAACTCCGTCAGATAACCATAAGTCGCGACAAACCCATTGATGGGTGAGGCGATAACGGCGATAACGGAGGGATG
TCAAAGATCCCCTTCATGTCATCCCAAACGGCCGTCCAACTTGACGGAGTCAGCGGAGCCACGGCAGAGACCCCGTCAGCCTCCGCCTCCGCCTTCTCTC
TCTTCACCTCTCTCCTCTCTCTCCCCTCGCTCTCATCCTCCCTGCACCTCTTCCGGAGAGTATCCGCCGGTGGGAAAGACTCTGTCGAGCTCCCAATCTC
GTGAGGGAAGTTGAGTATGGCCTTGCTCCCGCGCAGCTTGAACGCCGCCCGGTCGTACGCCTTCGCCGCCTCCACGGCGGTGTCGAACGTCCCCAGCCAA
ACCCTAGCCCCTCTCCGGTTCGGATCCCGAATCTCAGCCGCGAATTTACCCCACGGCCGCCTCCTCACGCCCCGGTAGTGCCTC