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Detailed information on CNT30564484


BLAST search results

BLAST vs Swiss-Prot:
sp|Q0ZIW8|NU4C_VITVI, E-value = 9e-46

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30231113Actinidia chinensisAnanas comosus11.9523.4483.05177forward

Expression of CNT30564484

Peptides detected in this lncRNA

>peptide 1 (43 aa)
LWINKKPISFLLNFLISIPVFFSQSTQRYLFWKTTGFQHKREW*

>peptide 2 (31 aa)
MIIFDRCALLTSGNGIIKTSDSSTALYFYFF*

>peptide 3 (48 aa)
MSLSEVYFHFFFTALPDIELCNKIVENRIVTPLILFSCYVFNVLSFLC*

>peptide 4 (45 aa)
MVRRLVSTLRSMLPMTGNSLILLPVNFHVTVRSLLSFLLHCSPRY*

>peptide 5 (62 aa)
MDRKQDPGSLEIRFLCPPTREDYFPYIYRISRSFGPDIEAPFGISFFSFFMAFWLFCFYFFA*

Sequence

>CNT30564484
CTATGGATAAATAAAAAGCCCATAAGCTTCCTCTTGAATTTTCTGATTTCAATCCCAGTTTTCTTCTCTCAGTCTACACAAAGGTATTTATTTTGGAAAA
CCACGGGGTTTCAGCACAAACGAGAATGGTGAGGAGATTGGTTTCAACACTGAGGTCTATGCTACCTATGACAGGTAATTCTCTGATCCTCTTACCAGTG
AACTTTCATGTCACTGTCAGAAGTTTACTTTCATTTCTTCTTCACTGCTCTCCCAGATATTGAGCTCTGCAACAAGATTGTTGAAAACCGTATAGTAACA
CCTCTAATTTTATTTTCTTGCTATGTTTTCAATGTTCTAAGTTTTCTTTGCTAACCATATGCTAGATGAGCTCTAGTTGGAGTTTGATTGATGGCTAGTT
TTAGGTGTGAAAGTGGAACACGAAATCTGTTGTGTTGGTAACTGAAAATTTCCTTTTCAAGTTTACAAGGGAATGCATTACTTTTTTGCCCTACATATAT
TGTATAGTTGCATATGGACAGAAAGCAAGACCCAGGGAGTCTTGAAATAAGATTTTTATGCCCACCGACCAGAGAAGATTATTTTCCCTACATATATCGG
ATTAGCAGGTCCTTTGGACCGGATATTGAGGCTCCGTTTGGCATCAGCTTTTTCAGCTTTTTTATGGCTTTTTGGCTTTTCTGTTTTTACTTTTTTGCTT
AGTTTTAGTTAAAGTAAAGTCACAAAAGCAAAAAAGTCAAAAATTCTTAGCCTTTTTGGTAGCAAACTTAAAAACGGAGCCTGAGTTATCAAAAAAAAAA
TATTATGCCCACCGACCAGAGAAGATTATTTGCATTGTGCCCGCTATTATTAACCAAGAAAAGATAGAATGAGCATGAGGTAATAATTCCATATTAATCC
GAACTTGTCCATATGCTTCCATTTTTAATAAGATTCCAGCTAGGAGCATACAAATACTGAAATGCATCTCCATGGGTATCTGGTAACCATGTATGTAACG
GTATAATCATTAATTTGACAGCAAAAGCAATTAAAAAATCCAATATATAATATTATTTACAATGCCACTGCCCACTGGATACGATTGATTGGCTAATGTT
TCAAAATTTAATGTTGGTCCATTAAAACTATATAAACCGACACCCAGACCATTAAGAGAAAAACTGAACCTCCTGCTGTGTACAAAATAAATTTTGTACC
GGAGTACATACCACCCCCATATGGATAGAAGTAAATAAATGGGAATTAATTCTAACTCCCACATGATGAAAAACAGTAAAAGTTCTCAGGAAGAAAATGA
TCATATTTGACCGCTGTGCATTGCTAACATCAGGAAATGGAATAATCAAAACCTCAGATTCGAGTACTGCTTTGTATTTTTATTTTTTTTAAAGTGGATT
AGATTGGCACAACATAAACTAAAGAATCCTCATCTGAATGAGAATTTATGTTTCCTTAGCAGCCCCTGAAGAAGCCTTTTT