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Detailed information on CNT30564257


BLAST search results

BLAST vs Swiss-Prot:
sp|O24534|EF1A_VICFA, E-value = 0.0

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30521302Actinidia chinensisSetaria italica78.2760.987.74897forward
CNT30727586Actinidia chinensisCorchorus capsularis82.5573.3386.36946forward
CNT30160120Actinidia chinensisPistacia vera52.4448.3587.69601forward
CNT30287202Actinidia chinensisTriticum aestivum37.3559.5384.58428forward
CNT3084148Actinidia chinensisVigna radiata48.9534.4485.03561forward
CNT30248159Actinidia chinensisAvena sativa47.0349.2285.9539forward
CNT30665783Actinidia chinensisTriticum dicoccoides43.0254.1287.42493forward
CNT30598511Actinidia chinensisFraxinus excelsior38.3967.5986.14440forward
CNT30132437Actinidia chinensisLolium perenne52.445083.53601forward
CNT30647369Actinidia chinensisRosa chinensis25.3132.0187.59290forward
CNT30685098Actinidia chinensisTriticum urartu42.2332.9387.19484forward
CNT3037774Actinidia chinensisCucumis melo39.9759.2584.72458forward
CNT30101006Actinidia chinensisOryza rufipogon30.9851.0186.48355forward
CNT30580076Actinidia chinensisEchinochloa crusgalli30.5426.4686350forward
CNT30176122Actinidia chinensisVigna angularis44.5945.1484.54511forward
CNT30726405Actinidia chinensisLupinus angustifolius44.594.9786.08510forward
CNT3050294Actinidia chinensisCucumis sativus43.3781.0884.51497forward

Expression of CNT30564257

Peptides detected in this lncRNA

>peptide 1 (48 aa)
HRRSSTQFWERLLNKETSKLRQTWQNHQSISVEIVTNTEFSGKTLFFK*

>peptide 2 (47 aa)
MMMTWEVKLAASLAGSSLELEATNPRLRSFTATFFTLKPTLSPGSAS*

>peptide 3 (34 aa)
MGSSRDCIPPSSGRKTLPSRFHRTFPWNILELWHP

>peptide 4 (81 aa)
MTPTATVCLMSLTAKRPSGGYEAKVSTTMGLVGIIFTIPASPFFKNLGSFSSSFPDRLSILVSSSANLTAMWEVWQSRTGA*

>peptide 5 (45 aa)
MSSASRRVGPLYQSRFVDLSIMLSPSKPEMGTNGIFSGLYPTFFR*

Sequence

>CNT30564257
GCCACCGCCGGTCAAGCACCCAGTTCTGGGAACGGCTGCTCAACAAAGAAACCAGTAAACTAAGACAAACATGGCAAAACCACCAATCTATATCAGTAGA
AATTGTAACTAATACCGAGTTCTCGGGAAAAACTTTATTCTTCAAATAGTAGACTCCATCTGCGGTAGTAGGAACCTCCTCCACGGTTCACTTGGCACCC
TTCTTGGCAGCAGCCTTGGTGACCTTGGCTCCGGTAGGATCCTTCTTCTCAACACTCTTGATGACACCAACAGCCACGGTCTGCCTCATGTCCCTAACAG
CGAAACGACCGAGTGGAGGGTACGAGGCGAAAGTCTCCACCACCATGGGCTTGGTAGGAATCATCTTCACCATACCAGCATCGCCATTTTTCAAGAACTT
GGGCTCCTTCTCAAGCTCCTTTCCGGATCGCCTGTCAATCTTGGTCAGCAGCTCGGCAAACTTGACGGCTATGTGGGAGGTGTGGCAGTCGAGAACCGGG
GCATAACCGTTTCCAATCTGCCCTGGGTGGTTCATGATGATGACCTGGGAGGTGTGGCAGTCGAGAACCGGGGCATAACCGTTTCCAATCTGCCCTGGGT
GGTTCATGATGATGACCTGGGAGGTGAAGTTAGCAGCCTCCTTGGCAGGGTCATCCTTAGAGTTGGAAGCCACAAATCCACGCTTGAGATCCTTCACGGC
AACGTTCTTCACGTTGAAGCCAACGTTGTCACCTGGAAGCGCCTCCTGAAGAGCTTCGTGGTGCATCTCAACAGACTTGACTTCAGTTGTGAGTCCGGTG
GGCCCAAAGGTCACAACCATACCGGGCTTGATAATACCAGTCTCAACACGTCCCACTGGGACAGTTCCAATGCCACCAATCTTGTAGACATCCTGAAGTG
GGAGACGGAGAGGCTTGTCCGAGGGCCTCTTGGGCTCGTTAATCATGTCAAGCGCGTCGAGGAGGGTTGGGCCCTTGTACCAGTCAAGGTTTGTAGATCT
CTCAATCATGTTGTCTCCTTCAAAACCAGAGATGGGGACAAATGGGATCTTCTCGGGATTGTATCCCACCTTCTTCAGGTAGGAAGACACTTCCTTCACG
ATTTCATCGTACCTTCCCTTGGAATATTTTGGAGTTGTGGCATCCA