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Detailed information on CNT30564216


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30673169Actinidia chinensisSetaria viridis54.7131.8587.7122forward
CNT30520857Actinidia chinensisSetaria italica54.7112.9287.7122forward
CNT30639966Actinidia chinensisNymphaea colorata70.8510.5382.91158forward
CNT30533956Actinidia chinensisEucalyptus grandis69.9622.3584.62156forward
CNT30376200Actinidia chinensisArabidopsis thaliana31.847.3688.7371forward
CNT3021623Actinidia chinensisCitrullus lanatus47.097.7384.76105forward
CNT30730016Actinidia chinensisCorchorus capsularis43.9514.885.7198forward
CNT30629841Actinidia chinensisVigna unguiculata69.5126.585.81155forward
CNT30507460Actinidia chinensisNicotiana attenuata70.8552.1581.01158forward
CNT3042792Actinidia chinensisPrunus dulcis44.3926.8386.8799forward
CNT30182270Actinidia chinensisSecale cereale55.6122.4683.87124forward
CNT30292923Actinidia chinensisTriticum aestivum59.6458.3386.47133forward
CNT30222283Actinidia chinensisHordeum vulgare58.7431.1986.26131forward
CNT30390478Actinidia chinensisTriticum turgidum70.413.1784.71157forward
CNT3084712Actinidia chinensisVigna radiata66.3752.383.78148forward
CNT30238125Actinidia chinensisBrassica oleracea42.68.1183.1695forward
CNT30555733Actinidia chinensisOryza glaberrima26.914.2291.6760forward
CNT30437582Actinidia chinensisAegilops tauschii54.2636.6784.3121forward
CNT30249726Actinidia chinensisAvena sativa62.7817.4685140forward
CNT30261201Actinidia chinensisBrassica rapa45.2911.3783.17101forward
CNT304588Actinidia chinensisZea mays52.028.9987.07116forward
CNT30217087Actinidia chinensisKalanchoe fedtschenkoi39.468.4785.2388forward
CNT30129085Actinidia chinensisCorymbia citriodora69.9614.8183.33156forward
CNT30683149Actinidia chinensisTriticum urartu70.435.4483.44157forward
CNT30720963Actinidia chinensisTriticum spelta62.7825.1385140forward
CNT30344816Actinidia chinensisEragrostis tef30.491688.2468forward
CNT30597198Actinidia chinensisOryza meridionalis35.875.9786.2580forward
CNT30154501Actinidia chinensisPrunus persica66.8247.7684.56149forward
CNT30570425Actinidia chinensisVitis vinifera70.859.0981.65158forward
CNT3031830Actinidia chinensisTheobroma cacao70.8543.2982.91158forward
CNT3037642Actinidia chinensisCucumis melo47.534084.91106forward
CNT30582394Actinidia chinensisEchinochloa crusgalli62.7837.5386.43140forward
CNT30604850Actinidia chinensisOryza punctata25.565.8789.4757forward
CNT30556884Actinidia chinensisPanicum hallii62.7819.2885.71140forward
CNT30551919Actinidia chinensisOryza brachyantha37.675.3990.4884forward
CNT3049017Actinidia chinensisCucumis sativus30.947.0386.9669forward

Expression of CNT30564216

Peptides detected in this lncRNA

>peptide 1 (62 aa)
HALTSQIILEVITPPNIQVFLNGPGPPQSLGGAGSRPSDRPGGWRGTRRLTGLMSPGSPGFR*

Sequence

>CNT30564216
CCATGCATTAACATCACAAATCATCCTTGAAGTGATTACTCCCCCCAATATACAAGTTTTTCTAAATGGGCCAGGCCCACCTCAATCCCTCGGAGGAGCG
GGCTCACGGCCGTCCGATAGGCCGGGAGGTTGGAGAGGTACCAGGCGATTAACGGGCTTGATGTCACCGGGGTCTCCAGGCTTCCGATGAATGGGTCGCC
ATTGATGGGCTGGATCACTTGGT