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Detailed information on CNT30564019


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9AU11|PKS1_RUBID, E-value = 5e-92

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30378024Actinidia chinensisArabidopsis thaliana21.0528.3179.49156forward
CNT30281985Actinidia chinensisChenopodium quinoa27.138.4280.6201forward
CNT30381286Actinidia chinensisManihot esculenta22.1321.6681.1164forward
CNT30628855Actinidia chinensisVigna unguiculata40.7630.6381.46302forward
CNT30195656Actinidia chinensisPisum sativum22.5414.7181.44167forward
CNT30507146Actinidia chinensisNicotiana attenuata33.4723.3181.85248forward
CNT3045136Actinidia chinensisPrunus dulcis45.4854.1885.46337forward
CNT30156272Actinidia chinensisPistacia vera40.0819.2683.84297forward
CNT3096581Actinidia chinensisSolanum tuberosum36.8414.6182.78273forward
CNT30192533Actinidia chinensisSecale cereale23.7526.3581.82176forward
CNT3087878Actinidia chinensisVigna radiata41.5719.7180.52308forward
CNT30143557Actinidia chinensisMedicago truncatula42.3829.9978.34314forward
CNT30466546Actinidia chinensisSaccharum spontaneum27.5376.6981.86204forward
CNT30610101Actinidia chinensisGossypium raimondii40.7611.5884.44302forward
CNT30647274Actinidia chinensisRosa chinensis47.3720.1883.19351forward
CNT30680228Actinidia chinensisTriticum urartu18.0828.3984.33134forward
CNT30365392Actinidia chinensisSorghum bicolor27.1334.6682.59201forward
CNT30355776Actinidia chinensisLactuca sativa33.242.4182.52246forward
CNT30151821Actinidia chinensisPrunus persica45.4858.5184.27337forward
CNT30705527Actinidia chinensisPrunus avium35.957.4583.46266forward
CNT3022840Actinidia chinensisPopulus trichocarpa32.2524.5483.26239forward
CNT30114131Actinidia chinensisFicus carica44.9421.8687.99333forward

Expression of CNT30564019

Peptides detected in this lncRNA

>peptide 1 (45 aa)
MGNFGLGLAPFLDGFDGSLLAQFGNFHNHHGFLSRSPQSSTCNAS*

>peptide 2 (35 aa)
MEHHSLNSKPRYILEEVEGQAHFAEMSIDGPIAIR*

>peptide 3 (60 aa)
MSTPLVVQKTKWVILDLGWPHSLMALTAASLPNLGISTTTMVFFQDLLSQVHVTLLDHGFV

Sequence

>CNT30564019
GTGCCCAACACCCAATGATTCTTTGATTTAACACATACTATAACAAAGAACATTAGTTCCATTTCGCTACATAAATAGATGGCTTCTTTACTTTAAAATG
CAAACAGCAAAAGTGGAAGCAAACAAAACCCAACTTAACCCACAACACAACCACAAATAGAAGAGAAGCCCACAAACAGAAGCCCAAATGGTCAACCAGC
CCACTAAGTGCACAGGCTATGGAGCACCACAGTCTCAACAGTAAGCCCAGGTACATCCTTGAGGAGGTGGAAGGTCAGGCCCACTTCGCGGAGATGTCCA
TCGATGGCCCCATCGCTATCCGGTAAGATGGCTTGACCAACAAGACTGTCGAGGTGGGTGTCACTGGGTCCACGAAAAGTGACAGCAGTGATCTCAGAGC
AGACGACCAGTACACGGGCCCCCTTGTTGTTCTCTGCTAGGTCCTTGGCCAGACGGAGCACCGTGCCACCAGCGAAGCAACCCTGTTGGTACATCATGAG
GCGTTTGACAGACGGGCGGAGACCAAGGAGCTTTGTGAGCTGATAGTCAGCGCCCGGCATGTCGACTCCGCTAGTGGTACAAAAGACCAAATGGGTAATT
TTGGACTTGGGCTGGCCCCATTCCTTGATGGCTTTGACGGCAGCCTCCTTGCCCAATTTGGGAATTTCCACAACCACCATGGTTTTCTTTCAAGATCTCC
TCAGTCAAGTACATGTAACGCTTCTTGATCATGGATTTGTC