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Detailed information on CNT30564018


BLAST search results

BLAST vs Swiss-Prot:
sp|P48400|CHSA_IPOPL, E-value = 4e-27

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30700733Actinidia chinensisQuercus lobata35.3559.6282.87251forward
CNT30524897Actinidia chinensisPhaseolus vulgaris25.2129.1584.36179forward
CNT30628726Actinidia chinensisVigna unguiculata40.1425.9681.05285forward
CNT30644974Actinidia chinensisCannabis sativa25.6322.6783.52182forward
CNT3030385Actinidia chinensisTheobroma cacao17.8931.8382.68127forward
CNT30114127Actinidia chinensisFicus carica41.974383.89298forward

Expression of CNT30564018

Peptides detected in this lncRNA

>peptide 1 (42 aa)
MAPSLSGKMVWAAETNSNMGFSTSGIGSAPTITAAAPSPNKA*

>peptide 2 (35 aa)
MEHHSLNSKPRYILEEVEGQAHFAEMSIDGPIAIR*

Sequence

>CNT30564018
GTGCCCAACACCCAATGATTCTTTGATTTAACACATACTATAACAAAGAACATTAGTTCCATTTCGCTACATAAATAGATGGCTTCTTTACTTTAAAATG
CAAACAGCAAAAGTGGAAGCAAACAAAACCCAACTTAACCCACAACACAACCACAAATAGAAGAGAAGCCCACAAACAGAAGCCCAAATGGTCAACCAGC
CCACTAAGTGCACAGGCTATGGAGCACCACAGTCTCAACAGTAAGCCCAGGTACATCCTTGAGGAGGTGGAAGGTCAGGCCCACTTCGCGGAGATGTCCA
TCGATGGCCCCATCGCTATCCGGTAAGATGGTTTGGGCCGCCGAGACCAACTCAAACATGGGCTTCTCAACCTCTGGAATTGGGTCAGCCCCAACTATAA
CAGCGGCCGCACCATCACCAAACAAGGCTTGACCAACAAGACTGTCGAGGTGGGTGTCACTGGGTCCACGAAAAGTGACAGCAGTGATCTCAGAGCAGAC
GACCAGTACACGGGCCCCCTTGTTGTTCTCTGCTAGGTCATGTTTTCTATATGTACAACTTTTTTCTAACGGCAAATAAGCAATTTCTTTCTCTCTCACT
TTTTCGTAAAACGTTACTATGAATAACATATCACATGCATGATGTATCAAAAACTCCGTTAACCGACATACAAACAAAAAATATTAAGCGGTGATCATAT
TAAATCTTAC