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Detailed information on CNT30563984


BLAST search results

BLAST vs Swiss-Prot:
sp|Q76H85|H4_SILLA, E-value = 3e-22

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30317753Actinidia chinensisCorylus avellana80.7724.1484.52168forward
CNT30549690Actinidia chinensisIpomoea triloba71.6335.4883.22149forward
CNT30617135Actinidia chinensisSesamum indicum71.6314.8687.25149forward
CNT30197103Actinidia chinensisPisum sativum49.0425.6382.35102reverse complement
CNT30178595Actinidia chinensisSecale cereale76.4426.6887.42159forward
CNT3086297Actinidia chinensisVigna radiata80.2914.3680.24167forward
CNT30434720Actinidia chinensisAegilops tauschii76.4430.9388.68159forward
CNT30261175Actinidia chinensisBrassica rapa79.3334.9681.21165forward
CNT30143346Actinidia chinensisLolium perenne76.4427.2788.05159forward
CNT30720165Actinidia chinensisTriticum spelta54.3324.0991.15113forward
CNT30344127Actinidia chinensisEragrostis tef46.1547.0691.6796forward
CNT30325970Actinidia chinensisAsparagus officinalis74.0422.3288.31154forward
CNT30331117Actinidia chinensisDioscorea rotundata71.6315.7381.88149forward
CNT30147979Actinidia chinensisBrachypodium distachyon5018.3792.31104forward
CNT30101020Actinidia chinensisOryza rufipogon47.1216.8192.8698forward

Expression of CNT30563984

Peptides detected in this lncRNA

>peptide 1 (68 aa)
AASLLVDEATDPLNPTPPSQAPDRRLRDALDVVAQHLPVPLRSALAQPLAALASTRHFREREREREKEK

>peptide 2 (62 aa)
MRPLILLTPPLRARRRIAGFVMPWMLSRNTFRCRFAPPLPSPLPPLPLPDIFERERERERKRK

Sequence

>CNT30563984
GCCGCGAGTCTCCTCGTAGATGAGGCCACTGATCCTCTTAACCCCACCCCTCCGAGCCAGGCGCCGGATCGCCGGCTTCGTGATGCCCTGGATGTTGTCG
CGCAACACCTTCCGGTGCCGCTTCGCTCCGCCCTTGCCCAGCCCCTTGCCGCCCTTGCCTCTACCAGACATTTTCGAGAGAGAGAGAGAGAGAGAGAGAA
AGAGAAAA