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Detailed information on CNT30563752


BLAST search results

BLAST vs Swiss-Prot:
sp|P17598|CATA1_GOSHI, E-value = 3e-91

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30692136Actinidia chinensisOryza sativa30.612.1785.91149forward
CNT30377107Actinidia chinensisArabidopsis thaliana28.7529.689.29140forward
CNT30616919Actinidia chinensisSesamum indicum35.5253.5683.82173forward
CNT3021611Actinidia chinensisCitrullus lanatus45.1755.4285.91220forward
CNT30380803Actinidia chinensisManihot esculenta30.3931.5687.84148forward
CNT30405510Actinidia chinensisBeta vulgaris51.9553.8382.21253forward
CNT30526368Actinidia chinensisPhaseolus vulgaris40.8612.583.92199forward
CNT30708944Actinidia chinensisGlycine max34.0929.1786.75166forward
CNT3046375Actinidia chinensisPrunus dulcis69.6148.5782.89339forward
CNT30638211Actinidia chinensisCapsicum annuum66.9458.4279.75326forward
CNT30298786Actinidia chinensisTriticum aestivum25.0546.5686.89122forward
CNT30592095Actinidia chinensisMusa acuminata12.3220.3486.6760forward
CNT30663894Actinidia chinensisTriticum dicoccoides25.055.1987.7122forward
CNT3080335Actinidia chinensisBrassica juncea44.7638.4582.11218forward
CNT30715065Actinidia chinensisMalus domestica golden69.6123.8484.96339forward
CNT30687547Actinidia chinensisTriticum urartu28.1360.3583.94137forward
CNT30478285Actinidia chinensisArabidopsis halleri44.3562.4382.41216forward
CNT30369978Actinidia chinensisOryza glumipatula30.619.8485.91149forward
CNT30154060Actinidia chinensisPrunus persica69.6133.7681.71339forward
CNT30574555Actinidia chinensisVitis vinifera41.0724.1882.5200forward
CNT30704838Actinidia chinensisPrunus avium10093.4781.72487forward
CNT3022569Actinidia chinensisPopulus trichocarpa39.8422.3886.6194forward
CNT3038372Actinidia chinensisCucumis melo69.6130.8283.19339forward
CNT30575497Actinidia chinensisOryza barthii30.611.8885.91149forward
CNT30116279Actinidia chinensisOryza nivara29.987.3682.88146forward
CNT3050211Actinidia chinensisCucumis sativus45.3858.7888.69221forward

Expression of CNT30563752

Peptides detected in this lncRNA

>peptide 1 (57 aa)
CSFSAKKLSMFLFNTKRPTGCRGKISSGQVLVTSSGSKSNLSSWSGSIVWMKSFHSG*

>peptide 2 (32 aa)
VAHSLQRSYQCSCLTPSDPQVAGAKYPRAKSW*

>peptide 3 (45 aa)
MCKLSGWWEKKSRILQFSWICDFGLGLRAWTMSGNFIPSRMKKTGK

Sequence

>CNT30563752
GTTGCTCATTCTCTGCAAAGAAGTTATCAATGTTCTTGTTTAACACCAAGCGACCCACAGGTTGCAGGGGCAAAATATCCTCGGGCCAAGTCTTGGTAAC
ATCAAGTGGGTCAAAGTCAAATCTGTCTTCATGGTCAGGATCGATTGTCTGGATGAAAAGCTTCCACTCAGGATAGTTGCCAGCCGCAATTGAGTCGTAA
AGATCCTGAGTGGCGTGGCTGTGATTTGATCCTCCGACCTTAACCGACTCCTCCTCCAACAAGCATTTTACTCCACAAGTAGGTTTCCAGTGAAACTTCA
CGTAATGTGCTTTACCGGCCTTGTTGATTAGAGTATAGGAAAGTGAACATGTGCAAGCTTTCTGGGTGGTGGGAGAAGAAGTCGAGGATCCTCCAATTCT
CCTGGATATGCGACTTTGGGTTGGGTTTGAGAGCATGGACCATGTCAGGGAACTTCATCCCATCACGGATGAAGAAGACTGGGAAAT