« Back to Amborella trichopoda search


Detailed information on CNT3056329


BLAST search results

BLAST vs Swiss-Prot:
sp|P69309|UBIQP_AVEFA, E-value = 2e-151

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30500348Amborella trichopodaCoffea canephora71.654.9581.74827forward
CNT30615929Amborella trichopodaSesamum indicum72.8125.1481.93841forward
CNT3020302Amborella trichopodaCitrullus lanatus72.127081.75833forward
CNT30525173Amborella trichopodaPhaseolus vulgaris74.8141.5882.29864forward
CNT30629001Amborella trichopodaVigna unguiculata76.4572.1481.65883forward
CNT30488054Amborella trichopodaOlea europaea56.2875.6782.77650forward
CNT30124791Amborella trichopodaPhyscomitrium patens77.4978.9981.56895forward
CNT30145430Amborella trichopodaMedicago truncatula72.6447.7881.53839forward
CNT30262381Amborella trichopodaBrassica rapa78.5356.6281.92907forward
CNT30609009Amborella trichopodaGossypium raimondii73.1688.5780.95845forward
CNT30622898Amborella trichopodaDaucus carota78.5352.0184.01907forward
CNT30408298Amborella trichopodaPapaver somniferum73.9459.7281.62854forward
CNT30330420Amborella trichopodaDioscorea rotundata76.4552.1982.67883forward
CNT30111690Amborella trichopodaFicus carica73.9476.5982.08854forward

Expression of CNT3056329

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MVFPVRVLTKICIPPRSLSTKCSVDSFWIL*

>peptide 2 (30 aa)
MVLPVKVLTKICMPPRSLSTKWRVDSFWML*

>peptide 3 (33 aa)
MVSELSTSRVMVLPVRVLTKICMPPRSLRPSEE*

>peptide 4 (76 aa)
MEGGLLLDIVVRQGTTILELLTSKDQPLLIRWNPLLVLDLRLHIVNGIRAFHFKSNGLAGQGFDKNLHAPTKPETK*

>peptide 5 (62 aa)
RAQHFHISSIKDHKNTGVIHNIIFIIFKASTLKKNPIKSPARNKLAKNSSTHNHEKKTGSYY*

Sequence

>CNT3056329
TAGAGCACAACATTTTCACATCTCATCCATAAAAGACCACAAGAACACAGGCGTTATTCACAATATCATATTTATTATATTTAAAGCATCCACACTAAAA
AAAAACCCAATCAAAAGCCCAGCTAGAAACAAGCTGGCCAAGAACAGTTCAACACACAACCATGAAAAAAAAACGGGTTCATACTATTGAGAGAGAGAGC
AGTTCATCCAAAGCATAGAGACGCAGAGAAGGCCACCCATTACTGACCCCCACGAAGGCGGAGCACCAAATGGAGGGTGGACTCCTTCTGGATATTGTAG
TCCGCCAGGGTACGACCATCCTCGAGCTGCTTACCAGCAAAGATCAACCTCTGCTGATCAGGTGGAATCCCCTCCTTGTCTTGGATCTTCGTCTTCACAT
TGTCAATGGTATCCGAGCTTTCCACTTCAAGAGTAATGGTCTTGCCGGTCAGGGTTTTGACAAAAATTTGCATGCCCCCACGAAGCCTGAGACCAAGTGA
AGAGTAGACTCTTTCTGGATATTATAGTCAGCAAGGGTCCTTCCATCCTCAAGCTGTTTACCAGCAAAAATTAGCCTTTGCTGGTCAGGGGGAATACCCT
CCTTGTCTTGAATTTTAGCCTTCACGTTGTCAATTGTATCTGAGCTTTCAACCTCCAGGGTAATGGTCTTGCCAGTCAAGGTCTTGACGAAAATTTGCAT
GCCCCCACGAAGCCTGAGCACCAAATGGAGAGTAGACTCTTTCTGGATGTTGTAGTCGGCAAGAGTCCGACCATCCTCGAGTTGCTTACCAGCAAAAATT
AGTCTTTGCTGGTCAGGAGGAATACCCTCCTTGTCTTGAATCTTGGCCTTCACGTTGTCAATAGTGTCAGAGCTCTCGACCTCGAGAGTAATGGTCTTCC
CAGTGAGGGTCTTGACAAAGATCTGCATCCCCCCACGAAGCCTGAGCACCAAGTGTAGTGTGGACTCCTTTTGGATATTGTAATCAGCAAGAGTTCTGCC
ATCCTCAAGTTGCTTACCAGCAAAGATGAGCCTCTGCTGATCAGGGGGGATTCCCTCCTTATCCTGAATCTTGGCCTTCACATTATCGATAGTGTCCGAG
CTCTCGACCTCAAGAGTAATGGTCTTCCCAGTGAGGGTCTTGACAAAGATCTGCA