« Back to Amborella trichopoda search


Detailed information on CNT3056297


BLAST search results

BLAST vs Swiss-Prot:
sp|Q38771|TBA_AVESA, E-value = 2e-54

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30671949Amborella trichopodaSetaria viridis48.2933.783.87155forward
CNT30377837Amborella trichopodaArabidopsis thaliana37.6930.6382.64121forward
CNT3021397Amborella trichopodaCitrullus lanatus32.415.7184.62104forward
CNT30504800Amborella trichopodaNicotiana attenuata40.8129.6485.5131forward
CNT30451548Amborella trichopodaSaccharum spontaneum48.298.1585.16155forward
CNT30136973Amborella trichopodaLolium perenne25.5519.5284.1582forward
CNT30229091Amborella trichopodaAnanas comosus41.7437.4385.82134forward
CNT30716286Amborella trichopodaMalus domestica golden30.537.583.6798forward
CNT30174517Amborella trichopodaVigna angularis38.9462.1980.8125forward
CNT30333509Amborella trichopodaCynara cardunculus38.6322.5584.68124forward

Expression of CNT3056297

Peptides detected in this lncRNA

>peptide 1 (36 aa)
MDSGIRHKIGLKLCNINIDCPIEPKRRGQGGYDLRY*

Sequence

>CNT3056297
TGTGATCTCAGGAACTGACAATTGTTCATGGTAGGCCTTCTCAGCAGAAATAACTGGGGCGTATGAGGAAAGCATGAAATGGATTCGGGGATAAGGCACA
AGATTGGTCTGAAACTCTGTAACATCAACATTGATTGCCCCATCGAACCTAAGAGACGTGGTCAGGGAGGATATGATCTGAGATATTAACCGGTTAAGGG
ATCGCCTGCAGATATCATAAATTGCCTCATTGTCCAAAAGGACCGCAACATCTGTGTGTTCCAAGAGGGAATGCGTGGAAAGAACACTGTTATAGGGCTC
TACAACTGCCGTTGAAACCTG