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Detailed information on CNT30562825


BLAST search results

BLAST vs Swiss-Prot:
sp|P45960|TBB4_ORYSJ, E-value = 2e-100

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30675224Actinidia chinensisSetaria viridis61.4140.7985.25339forward
CNT30522155Actinidia chinensisSetaria italica47.4629.8184.73262forward
CNT30641079Actinidia chinensisNymphaea colorata44.9333.3885.08248forward
CNT30516889Actinidia chinensisJuglans regia46.5642.4883.66257forward
CNT30377262Actinidia chinensisArabidopsis thaliana49.0946.485.24271forward
CNT30617295Actinidia chinensisSesamum indicum37.8650.9884.21209forward
CNT3092760Actinidia chinensisSolanum tuberosum95.8376.4580.53529forward
CNT30291318Actinidia chinensisTriticum aestivum41.1268.1785.02227forward
CNT30223001Actinidia chinensisHordeum vulgare50.3610082.73278forward
CNT30390564Actinidia chinensisTriticum turgidum54.1798.3683.95299forward
CNT30586804Actinidia chinensisMusa acuminata74.0952.9881.66409forward
CNT30511260Actinidia chinensisSolanum lycopersicum58.3379.983.23322forward
CNT30553024Actinidia chinensisOryza glaberrima57.4322.282.65317forward
CNT30442409Actinidia chinensisAegilops tauschii50.7241.7982.5280forward
CNT30253208Actinidia chinensisAvena sativa59.0627.1282.52326forward
CNT30203517Actinidia chinensisHelianthus annuus61.4130.1685.84339forward
CNT30722533Actinidia chinensisTriticum spelta59.0657.1983.13326forward
CNT30595966Actinidia chinensisOryza meridionalis26.9924.3188.59149forward
CNT30369350Actinidia chinensisOryza glumipatula52.5441.7384.83290forward
CNT30570854Actinidia chinensisVitis vinifera34.4294.5387.89190forward
CNT30706519Actinidia chinensisPrunus avium61.9641.2588.3342forward
CNT3033661Actinidia chinensisTheobroma cacao29.5378.3788.34163forward
CNT3022005Actinidia chinensisPopulus trichocarpa94.267.883.46520forward
CNT30328090Actinidia chinensisAsparagus officinalis57.9794.6785320forward
CNT30332119Actinidia chinensisDioscorea rotundata45.4739.5384.06251forward
CNT3099978Actinidia chinensisOryza rufipogon48.0132.7285.28265forward
CNT30575061Actinidia chinensisOryza barthii61.4137.2984.37339forward
CNT30117026Actinidia chinensisOryza nivara42.3934.8283.76234forward
CNT30333708Actinidia chinensisCynara cardunculus51.6335.1984.56285forward

Expression of CNT30562825

Peptides detected in this lncRNA

>peptide 1 (66 aa)
LVFTFLISSSILVLLVLGHKIIHVALGFGELHFVHSFPSIPVQESFPPEHSSELLTHTSEHFLNGS*

>peptide 2 (62 aa)
SYSPSSSAVASWYCWYSDTRSFMLLSASVNSISSIPSPVYQCKKAFLLNIAVNCSLTRLNIS*

Sequence

>CNT30562825
CTCGTATTCACCTTCCTCATCAGCAGTAGCATCCTGGTATTGCTGGTACTCGGACACAAGATCATTCATGTTGCTCTCGGCTTCGGTGAACTCCATTTCG
TCCATTCCTTCCCCAGTATACCAGTGCAAGAAAGCTTTCCTCCTGAACATAGCAGTGAACTGCTCACTCACACGTCTGAACATTTCCTGAATGGAAGTTG
AATTCCCAATGAAGAGTTTTTGTTCTGAACATTGATCATCTGCTCATCCACCTCTTTGGTGCTCATTTTGCCCCTGAACATGGCTGATGCAGTGAGGTAG
CGGCCGTGGCGTGGGTCGGCAGCACACATCATGTTCTTCGCGTCCCACATTTGCTGAGTCAGTTCGGGGACTGTGAGGGCGCGGTATTGCTGGGACCCAC
GTGAGGTCAGAGGAGCAAAACCCACCATGAAGAAGTGGAGACGGGGGAAGGGGATCAGGTTTACAGCAAGCTTGCGGAGGTCAGAGTTGAGTTGACCAGG
GAAGCGGAGACAGCAAGTGACCCCACTCATGGTTGCAGAGATCAAGTGGTTC