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Detailed information on CNT30562763


BLAST search results

BLAST vs Swiss-Prot:
sp|P51851|PDC2_PEA, E-value = 1e-72

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30534838Actinidia chinensisEucalyptus grandis45.7539.7780.95210forward
CNT3021436Actinidia chinensisCitrullus lanatus18.326.0985.7184forward
CNT30157163Actinidia chinensisPistacia vera63.1866.0678.62290forward
CNT30146603Actinidia chinensisMedicago truncatula37.0444.8584.12170forward
CNT30128751Actinidia chinensisCorymbia citriodora56.4350.8881.85259forward
CNT30355760Actinidia chinensisLactuca sativa22.6615.5782.69104forward
CNT30369917Actinidia chinensisOryza glumipatula35.0826.6181.37161forward
CNT30154533Actinidia chinensisPrunus persica34.6436.2286.79159forward
CNT30706321Actinidia chinensisPrunus avium66.6755.4382.68306forward
CNT3026328Actinidia chinensisPopulus trichocarpa62.5354.3682.58287forward
CNT30113754Actinidia chinensisFicus carica6168.4681.07280forward

Expression of CNT30562763

Peptides detected in this lncRNA

>peptide 1 (41 aa)
MCWNRTLTLKASLGSHLRGNPSSEHTQMQGRSQSSRDRAAL*

>peptide 2 (81 aa)
QFLTIEPRVPCLSNHRSLTRQHLLNVLEQNIDPQGLFRLTLERKSLIRTHPNAGPFAIITRSGCTIIALSFFKSSEYPTEL*

Sequence

>CNT30562763
TCAGTTTCTGACAATTGAACCAAGAGTCCCCTGTCTCAGCAATCACCGCAGTCTCACTCGACAGCATCTTCTGAATGTGCTGGAACAGAACATTGACCCT
CAAGGCCTCTTTAGGCTCACACTTGAGAGGAAATCCCTCATCAGAACACACCCAAATGCAGGGCCGTTCGCAATCATCACGCGATCGGGCTGCACTATAA
TTGCCTTATCTTTCTTTAAAAGTAGTGAGTACCCAACTGAACTGTAGTCATTGAAAATGGGCCCAGCAAACAAGTATGCATCTGCGGATTCAACAATTTC
CGCGCAGAAGCCGGTGCTCACAGCACCCCAATAGGTCCCGATGAAGTGGGGGTGGTTCTCCGGCACGAACCCTTTGGCCGAGGGCATTACTGCCAGCGCA
TAACCACATGCATCAGCCAATTCAACGAAGGCTTCAGAAGCATTGGCAACTCGCAGTTT