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Detailed information on CNT30562726


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30677101Actinidia chinensisSetaria viridis35.0115.9688.49139forward
CNT30617447Actinidia chinensisSesamum indicum45.3430.4192.22180reverse complement
CNT30712450Actinidia chinensisGlycine max53.657589.67213forward
CNT30225509Actinidia chinensisHordeum vulgare60.247.2387.87239forward
CNT30466470Actinidia chinensisSaccharum spontaneum60.252.9988.7239reverse complement
CNT30609809Actinidia chinensisGossypium raimondii32.7530.5990130forward
CNT30646978Actinidia chinensisRosa chinensis53.6568.0592.02213forward
CNT30713553Actinidia chinensisMalus domestica golden59.4535.0193.22236forward
CNT30627950Actinidia chinensisDaucus carota50.3846.5194.5200forward
CNT30149608Actinidia chinensisBrachypodium distachyon35.0112.0390.65139forward
CNT30603707Actinidia chinensisOryza punctata28.7232.4888.6114reverse complement

Expression of CNT30562726

Peptides detected in this lncRNA

>peptide 1 (69 aa)
MPYSQEKLERSSTKGYLYPKPTQVGRENASSQCSSTRRYGAEVTHAILPGKARTVFNKRVPVPESDIGG*

>peptide 2 (33 aa)
PYWSRGMEEARLAERWLMVQGSKVTLLFQGKKG*

Sequence

>CNT30562726
CCTTATTGGTCCCGAGGGATGGAGGAGGCTAGGTTAGCTGAAAGATGGTTAATGGTTCAAGGAAGTAAGGTGACCCTGCTTTTTCAGGGTAAGAAGGGGT
AGAGAAAATGCCTCAAGCCAATGTTCGAGTACCAGGCGCTACGGCGCTGAAGTAACCCATGCCATACTCCCAGGAAAAGCTCGAACGGTCTTCAACAAAA
GGGTACCTGTACCCGAAACCGACACAGGTGGGTAGAGAAAATGCCTCAAGCCAATGTTCGAGTACCAGGCGCTACGGCGCTGAAGTAACCCATGCCATAC
TCCCAGGAAAAGCTCGAACGGTCTTCAACAAAAGGGTACCTGTACCCGAATCTGACATAGGTGGGTAGGTAGAGAATACTTAGGGGCGCGAGACAAC