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Detailed information on CNT30562499


BLAST search results

BLAST vs Swiss-Prot:
sp|P46293|RS16_GOSHI, E-value = 4e-35

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697810Actinidia chinensisOryza sativa52.2520.4688.79116forward
CNT30378107Actinidia chinensisArabidopsis thaliana21.1714.3389.3647forward
CNT30280960Actinidia chinensisChenopodium quinoa26.135.5791.3858forward
CNT30295032Actinidia chinensisTriticum aestivum53.622.884.03119forward
CNT30555554Actinidia chinensisOryza glaberrima36.9410.0491.4682forward
CNT30438780Actinidia chinensisAegilops tauschii37.3910.3485.5483forward
CNT30247768Actinidia chinensisAvena sativa37.3913.6585.5483forward
CNT30663140Actinidia chinensisTriticum dicoccoides37.3912.0385.5483forward
CNT30472632Actinidia chinensisSaccharum spontaneum37.391.792.7783forward
CNT30136796Actinidia chinensisLolium perenne37.3912.1585.5483forward
CNT30365247Actinidia chinensisSorghum bicolor70.7223.1285.35157forward
CNT30620437Actinidia chinensisCajanus cajan55.4117.2591.06123forward
CNT30431542Actinidia chinensisPapaver somniferum32.888.887.6773forward
CNT30151313Actinidia chinensisBrachypodium distachyon70.7233.1283.44157forward
CNT30581659Actinidia chinensisEchinochloa crusgalli37.3912.8990.3683forward
CNT30118078Actinidia chinensisOryza nivara52.2518.4788.79116forward

Expression of CNT30562499

Peptides detected in this lncRNA

>peptide 1 (73 aa)
RSVLMISLLTVGLLKPGASTTTTELLGLAAPRIGDEGLSDALTDGVDLGGVAAALDADAHVNAGETLTAEEEDR

>peptide 2 (37 aa)
KRTDDIALNGRTSETWREHHDHRTSWARSASDRRRGP*

Sequence

>CNT30562499
AGAAGCGTACTGATGATATCGCTCTTAACGGTAGGACTTCTGAAACCTGGCGCGAGCACCACGACCACCGAACTTCTTGGGCTCGCAGCGCCTCGGATCG
GCGACGAGGGCCTTAGCGATGCTCTGACGGATGGCGTAGATCTGGGAGGTGTGGCCGCCGCCCTTGACGCGGATGCGCATGTCAACGCCGGCGAAACGCT
GACGGCCGAGGAGGAGGATCGG