Detailed information on CNT30562394


BLAST search results

BLAST vs Swiss-Prot:
sp|P12355|PSAF_SPIOL, E-value = 4e-33

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30188078Actinidia chinensisSecale cereale26.5117.2380.84167forward
CNT30540845Actinidia chinensisBrassica napus15.0820.0483.1695forward
CNT30313614Actinidia chinensisCamelina sativa15.7125.5282.8399forward
CNT30620828Actinidia chinensisCajanus cajan26.5176.2682.04167forward
CNT3032243Actinidia chinensisTheobroma cacao32.734.6281.07206forward

Expression of CNT30562394

Peptides detected in this lncRNA

>peptide 1 (70 aa)
MSASASGGGAPSDSRIDDSATAAESACSGDDASCSCLESDKHITLTLELNLDFWCLASGSLDRFVGIVRDI

>peptide 2 (62 aa)
MIPASSAAASPSSQTASTPCTASALICLPVPAEEEPLPTAGSTIAPLLLRVPAAVTMPLVVV*

>peptide 3 (37 aa)
MYKNRIPGVMNSPQCLWSPLTIRWGSPSDPHSSPCFP*

Sequence

>CNT30562394
GTGTTGGCTTCTTGTCGTCTCGGATGGCGATGAGGTAGCTGCGTCCCACCCACCCAATCCACCCGGCTATGTATAAAAACAGAATCCCAGGGGTTATGAA
CTCTCCCCAGTGTCTCTGGTCCCCGCTCACTATTAGGTGGGGCAGCCCATCCGACCCACACAGCAGCCCCTGCTTCCCGTAGTTGTCGAACCTCCTCTTC
GTCTTCTCCATCGTGGGGCAGCCCATCCGACCCACACAGCAGCCCCTGCTTCCCGTAGTTGTCGAACCTCCTCTTCGTCTTCTCCATCGTCGCCTTTATT
GCCAGCGCCGGGGCGCTGTCCGGGGCGTACAGCTTCAGCGATGATTCCAGCTTCTTCAGCTGCTGCTTCTCCCTCTTCGCAAACTGCTTCGACTCCTTGC
ACGGCGTCAGCCCTGATATGTCTGCCAGTGCCAGCGGAGGAGGAGCCCCTTCCGACAGCAGGATCGACGATAGCGCCACTGCTGCTGAGAGTGCCTGCAG
CGGTGACGATGCCTCTTGTAGTTGTTTAGAGTCAGATAAGCATATCACCCTAACACTAGAACTAAACCTCGATTTTTGGTGCCTTGCAAGTGGTAGTTTG
GATAGGTTTGTGGGAATTGTCAGAGACATT