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Detailed information on CNT30562231


BLAST search results

BLAST vs Swiss-Prot:
sp|P0CH33|UBQ11_ARATH, E-value = 8e-160

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30201346Actinidia chinensisPisum sativum73.1765.0284.95671forward
CNT30364822Actinidia chinensisSorghum bicolor71.8677.4484.98659forward

Expression of CNT30562231

Peptides detected in this lncRNA

>peptide 1 (40 aa)
MVSELSTSSVMVLPVRVLTKICMPPRRRRTRWRVDSFWML*

>peptide 2 (36 aa)
MPSLSWIFALTLSMVSELSTSRVMVLPVRVLTKICI*

>peptide 3 (37 aa)
MVSELSTSRVIVFPVRVLTKICMPPRRRRTRCRVDSF*

Sequence

>CNT30562231
AAGAAAAGCACAAACGATTTATTGATAACCCATGTTAGGGTAACACACAATACCAACTAAAATATAAAGAGAACCACATCACTCCAAATCATAGGGAAAT
CAAATAGAAGCCATGGACAGTTTTTGGAAACCACCACAGACAAGGTGAAGGGCCCTTGACTCCTGGATTTTAGAAACCTCCACGGAGACGAAGCACAAGG
TGAAGGGTTGACTCCTTCTGGATGTTATAATCTGCAAGGGTTCGGCCATCCTCGAGCTGCTTCCCAGCAAAGATCAGCCTCTGCTGATCTGGTGGGATCC
CCTCCTTGTCCTGAATTTTTGCCTTGACATTGTCAATGGTATCAGAGCTTTCAACCTCAAGGGTAATAGTTTTTCCGGTGAGGGTCTTGACAAAAATCTG
CATGCCACCGCGGAGGCGGAGGACGAGGTGCAGGGTCGATTCCTTCTGAATATTGTAGTCAGCCAGGGTGCGGCCATCCTCAAGCTGTTTTCCAGCAAAG
ATCAGCCTCTGCTGATCCGGTGGGATCCCTTCCTTGTCTTGAATCTTGGCTTTGACATTGTCAATGGTGTCAGAGCTTTCCACCTCGAGCGTGATGGTCT
TGCCTGTGAGGGTCTTAACAAAGATCTGCATGCCACCACGGAGGCGGAGGACAAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCCGCTAGGGTGCG
GCCGTCCTCGAGCTGCTTTCCAGCAAAGATCAGCCTTTGCTGGTCTGGTGGGATGCCTTCTTTGTCCTGGATCTTTGCCTTGACATTATCGATGGTGTCA
GAGCTTTCCACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTAACGAAGATCTGCATCTAGAGAGAGAGAGAGAGATTGATTAGAGATAATATAGATC
TGATCTCTTCTTCTTGG