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Detailed information on CNT30562225


BLAST search results

BLAST vs Swiss-Prot:
sp|P0CH33|UBQ11_ARATH, E-value = 6e-160

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3045767Actinidia chinensisPrunus dulcis77.2147.0784.52691forward
CNT30156153Actinidia chinensisPistacia vera76.8759.7284.59688forward
CNT30217467Actinidia chinensisKalanchoe fedtschenkoi73.376.3785.37656forward
CNT30726539Actinidia chinensisLupinus angustifolius76.271.7184.9682forward

Expression of CNT30562225

Peptides detected in this lncRNA

>peptide 1 (37 aa)
MVSELSTSRVIVFPVRVLTKICMPPRRRRTRCRVDSF*

>peptide 2 (40 aa)
MVSELSTSSVMVLPVRVLTKICMPPRRRRTRWRVDSFWML*

>peptide 3 (35 aa)
MPSLSWIFALTLSMVSELSTSRVMVLPVRVLTKICI

Sequence

>CNT30562225
CAAGAAACTGAACAACACCATCCACTGAACTAAAAGAAAAGCACAAACGATTTATTGATAACCCATGTTAGGGTAACACACAATACCAACTAAAATATAA
AGAGAACCACATCACTCCAAATCATAGGGAAATCAAATAGAAGCCATGGACAGTTTTTGGAAACCACCACAGACAAGGTGAAGGGCCCTTGACTCCTGGA
TTTTAGAAACCTCCACGGAGACGAAGCACAAGGTGAAGGGTTGACTCCTTCTGGATGTTATAATCTGCAAGGGTTCGGCCATCCTCGAGCTGCTTCCCAG
CAAAGATCAGCCTCTGCTGATCTGGTGGGATCCCCTCCTTGTCCTGAATTTTTGCCTTGACATTGTCAATGGTATCAGAGCTTTCAACCTCAAGGGTAAT
AGTTTTTCCGGTGAGGGTCTTGACAAAAATCTGCATGCCACCGCGGAGGCGGAGGACGAGGTGCAGGGTCGATTCCTTCTGAATATTGTAGTCAGCCAGG
GTGCGGCCATCCTCAAGCTGTTTTCCAGCAAAGATCAGCCTCTGCTGATCCGGTGGGATCCCTTCCTTGTCTTGAATCTTGGCTTTGACATTGTCAATGG
TGTCAGAGCTTTCCACCTCGAGCGTGATGGTCTTGCCTGTGAGGGTCTTAACAAAGATCTGCATGCCACCACGGAGGCGGAGGACGAGGTGGAGGGTAGA
CTCCTTCTGGATGTTGTAGTCCGCTAGGGTGCGGCCGTCCTCGAGCTGCTTTCCAGCAAAGATCAGCCTTTGCTGGTCTGGTGGGATGCCTTCTTTGTCC
TGGATCTTTGCCTTGACATTATCGATGGTGTCAGAGCTTTCCACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTAACGAAGATCTGCATCTG