« Back to Actinidia chinensis search


Detailed information on CNT30562215


BLAST search results

BLAST vs Swiss-Prot:
sp|P0CH33|UBQ11_ARATH, E-value = 2e-154

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30460578Actinidia chinensisSaccharum spontaneum68.0432.9885660forward

Expression of CNT30562215

Peptides detected in this lncRNA

>peptide 1 (40 aa)
MPSLSWIFALTLSMVSELSTSRVMVLPVRVLTKICICTSQ*

>peptide 2 (40 aa)
MVSELSTSSVMVLPVRVLTKICMPPRRRRTRWRVDSFWML*

>peptide 3 (37 aa)
MVSELSTSRVIVFPVRVLTKICMPPRRRRTRCRVDSF*

Sequence

>CNT30562215
ATTTGAAGAAGAGAAAATGGGCAAACATCACTTCCACTGCAATGATAAAACCACAAGAAACTGAACAACACCATCCACTGAACTAAAAGAAAAGCACAAA
CGATTTATTGATAACCCATGTTAGGGTAACACACAATACCAACTAAAATATAAAGAGAACCACATCACTCCAAATCATAGGGAAATCAAATAGAAGCCAT
GGACAGTTTTTGGAAACCACCACAGACAAGGTGAAGGGTTGACTCCTTCTGGATGTTATAATCTGCAAGGGTTCGGCCATCCTCGAGCTGCTTCCCAGCA
AAGATCAGCCTCTGCTGATCTGGTGGGATCCCCTCCTTGTCCTGAATTTTTGCCTTGACATTGTCAATGGTATCAGAGCTTTCAACCTCAAGGGTAATAG
TTTTTCCGGTGAGGGTCTTGACAAAAATCTGCATGCCACCGCGGAGGCGGAGGACGAGGTGCAGGGTCGATTCCTTCTGAATATTGTAGTCAGCCAGGGT
GCGGCCATCCTCAAGCTGTTTTCCAGCAAAGATCAGCCTCTGCTGATCCGGTGGGATCCCTTCCTTGTCTTGAATCTTGGCTTTGACATTGTCAATGGTG
TCAGAGCTTTCCACCTCGAGCGTGATGGTCTTGCCTGTGAGGGTCTTAACAAAGATCTGCATGCCACCACGGAGGCGGAGGACAAGGTGGAGGGTAGACT
CCTTCTGGATGTTGTAGTCCGCTAGGGTGCGGCCGTCCTCGAGCTGCTTTCCAGCAAAGATCAGCCTTTGCTGGTCTGGTGGGATGCCTTCTTTGTCCTG
GATCTTTGCCTTGACATTATCGATGGTGTCAGAGCTTTCCACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTAACGAAGATCTGCATCTGTACATCC
CAATAATACAATTTAAAAAAAAAATCAAATCTATCCATAATAGAAACACGCTAATTAAACAATGACATCC