Detailed information on CNT30562110


BLAST search results

BLAST vs Swiss-Prot:
sp|P51819|HSP83_IPONI, E-value = 5e-63

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30675663Actinidia chinensisSetaria viridis14.4125.5984.87119forward
CNT30517898Actinidia chinensisJuglans regia20.118.3484.94166forward
CNT30379122Actinidia chinensisManihot esculenta22.0341.5582.97182forward
CNT30212676Actinidia chinensisHelianthus annuus12.5929.385.58104forward
CNT30126131Actinidia chinensisCorymbia citriodora31.7245.882.82262forward
CNT30481150Actinidia chinensisChara braunii22.0312.8879.67182forward
CNT30149846Actinidia chinensisBrachypodium distachyon11.1420.7784.7892forward

Expression of CNT30562110

Peptides detected in this lncRNA

>peptide 1 (63 aa)
MSLIVLHRFSNDFFFSSFFFFSSSVSSSSFNPSFVAETSFFPSYSFNCPTAYSSMASTMKSTS*

>peptide 2 (59 aa)
MSFWPSFILVTLGRVIPEQLCQFRSVLAVLVNTQLQILRKSFIELVIVLLVVCDFIEHLN

>peptide 3 (31 aa)
MSAEQSQTAASQGLSPTCRSCRPLLSSSAPP*

Sequence

>CNT30562110
CCAAAACTGAAGAAACAGAAGACTCTAAAGAGACCCCCATCGCCAAGACACCAATTCACAAATAAAGAATAATTTTCATAGCCCTCAATCGACTTCCTCC
ATTTTGCTTTCCTCGTTCCCTTCCTCCTCCAAAGCCGGCATGTCGACATCGTCACCACCCTCCTCATCCTCATCAATGCTCAGACCCAATTTCAACATCC
TGTGAATCCTCGCTGCGAATGTGTTTGGATCATCAAGACTGAACCCGGATGTCAGCAGAGCAGTCTCAAACAGCAGCATCACAAGGTCTTTCACCGACTT
GTCGTTCTTGTCGGCCTCTGCTCTCTTCCTCAGCTCCTCCATGATGCCATTACAACCACTTTCTCAATCTTGTCACCAAGAATGTCTTTGATTGTTTTGC
ACAGATTTTCAAATGATTTCTTCTTTTCCTCCTTTTTCTTCTTCTCTTCCTCCGTCTCATCATCAAGTTTCAACCCTTCCTTTGTAGCAGAAACAAGCTT
TTTCCCATCATATTCCTTCAACTGTCCGACAGCATATTCGTCAATGGCATCAACCATGAAGAGCACTTCATAGCCCTTCTTCTTGAGCCGCTCCAAGAAT
GGGGAATTCTCAACAGCTTTTTTGCTCTCGCCGGTAATGTAGTAGATGTCCTTCTGGCCCTCCTTCATTCTTGTGACTCTTGGTCGAGTGATACCGGAGC
AGCTCTGCCAATTTCGCTCTGTTCTGGCTGTCCTCGTGAATACCCAACTTCAAATTCTTCGAAAAAGCTTCATAGAACTTGTTATAGTCCTCCTTGTTGT
CTGCGATTTCATTGAACATCTCAATG