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Detailed information on CNT3056169


BLAST search results

BLAST vs Swiss-Prot:
sp|P08834|NU1M_CITLA, E-value = 4e-35

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690827Amborella trichopodaOryza sativa99.4513.1389.23362forward
CNT30501657Amborella trichopodaCoffea canephora79.125.8691.67288forward
CNT30592619Amborella trichopodaMusa acuminata38.746.1190.78141forward
CNT30598800Amborella trichopodaFraxinus excelsior48.3547.3192.05176forward
CNT30207841Amborella trichopodaHelianthus annuus77.210.4991.46281forward
CNT30687453Amborella trichopodaTriticum urartu98.086.6887.96357forward
CNT30480890Amborella trichopodaArabidopsis halleri41.4845.3590.73151forward
CNT30354619Amborella trichopodaLactuca sativa43.969.690.62160forward
CNT30574571Amborella trichopodaVitis vinifera79.674.7191.72290forward
CNT30115707Amborella trichopodaOryza nivara99.458.3189.23362forward

Expression of CNT3056169

Peptides detected in this lncRNA

>peptide 1 (47 aa)
MKNEECPAPLFSFLRSKILKLVKTYPLFQSELVPRTPGHWLSPTVNH*

>peptide 2 (31 aa)
MRNMTNTGNKGIPDHICFCAMAFSLELREPTR

Sequence

>CNT3056169
GACCCGACATTCATTAGTTTCGAATGAAGAATGAAGAGTGCCCAGCCCCTCTTTTTTCTTTTCTAAGATCCAAGATTTTGAAGTTGGTAAAGACCTACCC
CTTGTTTCAGTCAGAATTAGTCCCTCGGACCCCGGGACATTGGCTTTCGCCAACAGTGAACCATTAAGGATCGCATCCCGTGCATGTTCTACATTATAGC
CAGCAACTGATTCAGCTTCCGCTTCTAGGAGATCAGATGGAGCTCAATTAGTTTCTGCTAGACGAGGAATGAGGAACATGACCAATACGGGGAACAAGGG
AATACCGGACCATATCTGCTTTTGCGCCATGGCATTCTCACTTGAATTACGGGAACCTACACGT