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Detailed information on CNT30561658


BLAST search results

BLAST vs Swiss-Prot:
sp|O23755|EF2_BETVU, E-value = 0.0

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30674834Actinidia chinensisSetaria viridis30.4355.5483.15356forward
CNT3019597Actinidia chinensisCitrullus lanatus34.5354.0182.43404forward
CNT30728649Actinidia chinensisCorchorus capsularis29.2331.481.87342forward
CNT30405823Actinidia chinensisBeta vulgaris18.8949.1186.43221forward
CNT30488117Actinidia chinensisOlea europaea22.0552.8784.11258forward
CNT3085191Actinidia chinensisVigna radiata23.7638.7782.37278forward
CNT30143941Actinidia chinensisMedicago truncatula23.0860.2780.37270forward
CNT3059659Actinidia chinensisArabidopsis lyrata16.4144.2486.98192forward
CNT30605685Actinidia chinensisGossypium raimondii37.6157.5984.32440forward
CNT30203835Actinidia chinensisHelianthus annuus23.9358.3380.36280forward
CNT30361520Actinidia chinensisSorghum bicolor16.4128.0782.29192forward
CNT30154011Actinidia chinensisPrunus persica12.4851.9686.99146forward
CNT3050899Actinidia chinensisCucumis sativus14.2766.2786.23167forward

Expression of CNT30561658

Peptides detected in this lncRNA

>peptide 1 (34 aa)
APENRTDINCPSNKHNTVTVVTKKIKLVQKASIT*

>peptide 2 (36 aa)
MNIMTNLQLVLELRQWCHLLLQTLSLPNLGHKGCCL*

>peptide 3 (62 aa)
MSTTILGPVVSGPKHQIFFARSLSQPNSSDKILERTLGSSLGPTRPSSMASASPSSMGLASM*

Sequence

>CNT30561658
AGCACCAGAAAACAGAACCGATATAAATTGTCCTTCGAACAAACACAACACAGTGACAGTAGTAACTAAGAAAATAAAACTCGTCCAAAAAGCAAGCATA
ACATAAGACCCCGGAGGGATTAACTCGACAACGAAACGTGACTCCACAGTCGCATATCAGAAAAATGAGAAACAAAAGCAAAAAATTATGCCCAGCAATC
AGCATGTGTATGTCTTTATCATCTCTCTCAAGAGGCTGAACTCTAGTCACTTGGAATGAATATTATGACAAACTTACAGCTTGTCCTCGAACTCAGACAG
TGGTGTCATTTGCTCCTTCAAACCCTTTCTCTTCCGAATCTCGGTCACAAGGGTTGCTGCCTGTGATCCGGATTCCAACGGATCCGACGACATCATTTCC
CAATGATCAAAAACACACTGCGGAAAGGCCTGCCCTGAAGTTGCTGCCCTCAAAGTGCTCGAGAATCCAAACGACTCAATAACGGGAAGGTACGCCTTGA
TGTTGTAGAGAGGAGTACCTGGCCTCTGCATTTCCTCAAACACGTGACCACGTTTTTGATTCAGAACACTGTAGATTCCACCGAGGGCATTCTCTGGGGC
TTGGATCTCCACCAAGTATACGGGCTCCAAAAGACGGGGCTTGGCGGTTAGCTGGGAAGCGTAAATAACCCTCCTAGCCGTTGGAATGACCTGGCCACCA
CCTCTGTGAATAGCATCAGCGTGAAGAACAACGTCACAAACTTCAAAGCAAATACCCCGCATGTTTTCTTCCGCAAGCGCCCCTTCCTTTGATGCCCATT
GAAACCCAGCAACAACCGAGTCCTTGATTTCATTGAGGTATTGAACTCCCTTACACATGTCAACCACCATATTAGGGCCAGTGGTTTCTGGGCCAAAACA
CCAGATTTTCTTTGCGAGATCCTTGTCCCAACCGAACTCTTCAGACAAGATTTTAGAACGAACCTTGGGGTCATCTCTTGGACCAACACGTCCATCATCA
ATGGCCTCAGCAAGCCCCTCCTCCATGGGTCTAGCTTCCATGTAAAGACGGTTATGCTTGTTTGGCGACTTGCTCATCACAGTTCGGCTCGACTTCTCTA
GAACGGTTTCGCGGAACGACACAACAGGATCTGACTTTATAATTTCAGCACCACCCATGAAATCGTCCTG