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Detailed information on CNT30561426


BLAST search results

BLAST vs Swiss-Prot:
sp|P31542|CLPAB_SOLLC, E-value = 7e-71

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30676635Actinidia chinensisSetaria viridis14.2330.1789.52105forward
CNT30272384Actinidia chinensisChenopodium quinoa22.915.8181.07169forward
CNT30402985Actinidia chinensisBeta vulgaris2143.9181.94155forward
CNT30709232Actinidia chinensisGlycine max26.2926.0183.51194forward
CNT30122306Actinidia chinensisPhyscomitrium patens11.6529.8684.8886forward
CNT30287617Actinidia chinensisTriticum aestivum15.7220.3985.34116forward
CNT30171914Actinidia chinensisTrifolium pratense27.7824.8584.88205forward
CNT30144776Actinidia chinensisMedicago truncatula36.3120.4182.84268forward
CNT30311864Actinidia chinensisCamelina sativa24.2536.9886.59179forward
CNT3062430Actinidia chinensisArabidopsis lyrata24.2515.5287.71179forward
CNT303614Actinidia chinensisZea mays27.7835.9680205forward
CNT30207996Actinidia chinensisHelianthus annuus24.2540.2282.12179forward
CNT30717839Actinidia chinensisMalus domestica golden15.0421.8586.49111forward
CNT30150411Actinidia chinensisBrachypodium distachyon15.8523.1788.03117forward
CNT30116632Actinidia chinensisOryza nivara25.6149.3583.6189forward

Expression of CNT30561426

Peptides detected in this lncRNA

>peptide 1 (86 aa)
MATTASSCPMIRLWRVSSILRRRSDSSVETFSTGMPVHEETMFWMSTSVTKGPPSAALVSDLLVSLPLSKRAVICALRSISLSRNSP

>peptide 2 (39 aa)
FSLSNTSFSIISAISFTSSFVSCRNTIISSNLFKNSGRK*

Sequence

>CNT30561426
CTTCAGCCTCTCAAATACTTCTTTTAGCATTATATCAGCTATTTCCTTCACCTCCAGCTTTGTGAGCTGCCGGAATACAATCATCTCATCCAACCTATTC
AAAAACTCTGGCCGGAAATAATTTTTGAGTTCTCTTTCCACCAACTTCTTGAGTTGGTTGTAACTGTTATCTTCCTTGTACTCCTCGTCAATACCCAGAT
CAAAAAACCCAAATCGTTTGGGTCCCTTCTCAATTACACTACTTCCAACATTTGATGTCATAATCAAAAGCGTGTTCTTGAAATCCACAGTCCGGCCTTT
ACTATCCGTCAACCTTCCATCCTCTAGAATTTGAAGCATCAAGTCGTAGACATCACGGTGTGCTTTTTCAATCTCGTCAAACAGTACAACAGTGTAGGGA
CGGCGTCGAACAGCCTCGGTTAGTTGGCCGATTTGGGTTCTTGAGTCCAACACGGGCACGGCGAATTGCACGGCTGATGGCTACAACAGCTTCGTCCTGC
CCAATGATTCGCTTGTGGAGGGTTTCTTCCATCTTGAGGAGGCGATCAGATTCATCGGTTGAAACTTTCTCAACTGGAATGCCCGTCCATGAAGAGACAA
TGTTCTGGATGTCCACTTCTGTCACCAAAGGACCTCCATCTGCTGCTTTAGTCTCTGATTTACTCGTCTCATTGCCTTTGTCTAAAAGAGCTGTGATCTG
CGCCCTAAGGTCCATTTCTCTATCACGTAATTCCCCAG