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Detailed information on CNT30561418


BLAST search results

BLAST vs Swiss-Prot:
sp|P29402|CALX1_ARATH, E-value = 2e-180

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30676366Actinidia chinensisSetaria viridis12.732.7482.81128forward
CNT30517641Actinidia chinensisJuglans regia48.4190.7182.79488forward
CNT30377662Actinidia chinensisArabidopsis thaliana49.955.6480.12503forward
CNT30278532Actinidia chinensisChenopodium quinoa40.3837.0382.56407forward
CNT30728459Actinidia chinensisCorchorus capsularis34.4255.9782.13347forward
CNT30629033Actinidia chinensisVigna unguiculata49.781.0780.24501forward
CNT3043981Actinidia chinensisPrunus dulcis20.7359.3883.73209forward
CNT30189101Actinidia chinensisSecale cereale28.1727.0280.28284forward
CNT30238817Actinidia chinensisBrassica oleracea30.6557.9781.55309forward
CNT30264134Actinidia chinensisBrassica rapa38.9945.3380.41393forward
CNT30140632Actinidia chinensisLolium perenne1364.2283.21131forward
CNT30605054Actinidia chinensisGossypium raimondii33.5359.6186.39338forward
CNT30126269Actinidia chinensisCorymbia citriodora21.0355.9480.19212forward
CNT30686114Actinidia chinensisTriticum urartu21.4336.1280.09216forward
CNT30349705Actinidia chinensisEragrostis tef23.4133.6780.93236forward
CNT30365925Actinidia chinensisSorghum bicolor26.7930.4181.48270forward
CNT3038556Actinidia chinensisCucumis melo33.4342.6682.2337forward
CNT30149228Actinidia chinensisBrachypodium distachyon42.7690.7479.35431forward
CNT30101562Actinidia chinensisOryza rufipogon33.0438.5479.88333forward
CNT30585446Actinidia chinensisEchinochloa crusgalli9.8232.7886.8799forward
CNT30116414Actinidia chinensisOryza nivara8.5330.7184.8886forward
CNT3048947Actinidia chinensisCucumis sativus31.4522.479.18317forward

Expression of CNT30561418

Peptides detected in this lncRNA

>peptide 1 (50 aa)
RPFVSLSQLQTLVSKQFLCMIPQLSHHQLSKRCQTKCHLALSRSRCQWQQ*

>peptide 2 (61 aa)
SAFCFSFSTSNFGFQAVSLYDSATFSSPAIKTLSNKMPSCIVQISMPMAAIGSKSGVSSSK*

>peptide 3 (40 aa)
MVLAGISAGSKSSEERKLAFFFSSPSMRMRNSLLGFRMAV*

Sequence

>CNT30561418
TCGGCCTTTTGTTTCTCTTTCTCAACTTCAAACTTTGGTTTCCAAGCAGTTTCTCTGTATGATTCCGCAACTTTCTCATCACCAGCTATCAAAACGTTGT
CAAACAAAATGCCATCTTGCATTGTCCAGATCTCGATGCCAATGGCAGCAATAGGCTCAAAGTCAGGCGTGTCAAGTTCGAAATAGCTGGGGTTTGGAAT
TTCCTGAGGCTTCCAGATACCCTTGTAATTGGGATTGTCAATTTGCGGGGCGAACCATTTTCCCTTGTAAGCTGGATTGGTCTTCATTGGCCTCTTCCAA
ACGCCACAACCAGGAGCAGTCTCACACTTCGGGTTGTCAATTTTCGGAGACTCCCATTCGCCATCCTCATCATCATCCCAATCTTCTGGTTTCGTTGCCT
CGGGATCATCGATCTCTTCAGGCTCGTCGTCTAACCATCCTTCAGGTTTCACGGCTTCCTCATCTTCAATTTCCATCGGTGCATCCTCATCCCAGTCCTC
TGGTTTCTTATCATCAGGGTCAGGAATGGTCTTGGCAGGAATAAGTGCGGGCTCGAAGTCCTCAGAAGAGAGGAAATTGGCCTTCTTCTTCTCTTCACCG
TCTATGAGGATGCGCAACTCATTGCTAGGCTTCAGAATGGCAGTGTAGACATGGGTTAGCTTGTCAGATGGCACAGAGGGTGGGTACTTGAGATGGTGTT
CAACGTACTCTCCACTCTTGGGGTTCTTATGCTTTAGAATGAAGTGAACCTTGTTTGTGCCACCACATTTATCGGGTCCAAACATGATAGAGTAGGGGGA
CTCATTGTCAAACCCCTTAGCTGTCCACCCAGCTTCTTGAGGCCGGAGATATTTCAAATAAGCACCGCCACACTCAAGTCCATTTTGAAGACGAGTTTCA
AACTGAAGGACAATTGTCTCATCCTTGAGTTTAACAGGCTCATCAAGCTCTTTCACGATGGCGTGCTTCCTGGCCTTCTCACTCACAAGAAGCCCATAAT
CATCATGT