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Detailed information on CNT3056135


BLAST search results

BLAST vs Swiss-Prot:
sp|P93276|M030_ARATH, E-value = 3e-18

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30677703Amborella trichopodaSetaria viridis22.0465.0890.56233reverse complement
CNT30364089Amborella trichopodaSorghum bicolor19.3945.1585.85205reverse complement
CNT30595740Amborella trichopodaOryza meridionalis12.9653.3188.32137forward
CNT30335929Amborella trichopodaCynara cardunculus12.6836.3194.03134reverse complement
CNT30725732Amborella trichopodaLupinus angustifolius25.0758.7691.7265reverse complement

Expression of CNT3056135

Peptides detected in this lncRNA

>peptide 1 (35 aa)
MDHRRYLPMAFCLFKRPSFSMLGHPSNALGTLNTT*

>peptide 2 (34 aa)
MGTNLLSPSWVRSSNLFTIPGPTVFPSSNPQQIE*

>peptide 3 (30 aa)
MAGIFAVAKQKLGGQAKSCQRQQTTARKQEA

>peptide 4 (30 aa)
PNGLSHCSHFLADPSCERYTVRLSAPAVWL*

>peptide 5 (76 aa)
MIHGSQTISPHGLLPFQASFLLNARASIKCIGYTEHNIISMQARSNGWDFCCCKAKARRASQVLSKTTNYSSKARSK

Sequence

>CNT3056135
CACCTAATGGCTTAAGCCACTGTTCCCATTTCCTCGCTGACCCATCATGTGAAAGGTACACCGTTAGATTGAGTGCACCCGCCGTTTGGCTCTAAGCTCT
GCTCCTTCGACTGATTGTTCGCATTGGATCTCAGGTTCTCTATTGCACTCCCTAAATAGGGTTCTTTTCACCTTTCCCTCACGGTACTTGTACACAATCG
GTCATTGAGGAAGACTTAGGCTTAGAGAGTGGTCCCCCTTTCTCTTGTAAAAGCGATCAGAATTCGAACACGCTGCGTTTTACTGGGAAGGATCGAACCA
TGGGAACTAATCTACTATCACCTTCTTGGGTCAGATCTTCCAACCTTTTCACAATTCCCGGACCAACGGTTTTTCCATCATCCAATCCACAACAAATCGA
ATGAAACCAATGAGAACCAGTTACACGAGCTTAATAGGAGCCTACGAAAACTAGTTTGTTAGGCCCGAGTTACGTTTAAACGAGTGCAGTTCTACGAAAC
GAGCCTAATAGGAAAGGAAGCGAAGTGCGTAAGCACTGAGCGAGCCATGAGCGAAGCAAGAGGAACGAGGTTAAGCGGCTCCGCACCTTTGCTTCGTTTC
GCTTCGAGGATGAAAGAAGATTGAATTGCTTTGCTTTGCTAGCGCGAAGCTTCGTGGTAAGCTTCGTGTTTCTTTTTCTTCAAAGCCCCAATCCGCTCTC
GCTCGCCGATACTAACGGGGTCTCGGTTGATTTCCCTTCCTTTAGCTACTCAGATGTTTCAGTTCGCTATGTTTTCAAAGTCCTAAGAGCGCAGACTAGC
CACGTTGGATACGGTTTCCCGATCAGATGATCCATGGATCACAGACGATATCTCCCCATGGCCTTTTGCCTTTTCAAGCGTCCTTCCTTCTCAATGCTCG
GGCATCCATCAAATGCATTGGGTACACTGAACACAACATAATCTCGATGCAAGCAAGGTCTAATGGCTGGGATTTTTGCTGTTGCAAAGCAAAAGCTAGG
AGGGCAAGCCAAGTCTTGTCAAAGACAACAAACTACAGCTCGAAAGCAAGAAGCAAG