Detailed information on CNT30561159


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30263085Actinidia chinensisBrassica rapa87.6171.7597.781308forward

Expression of CNT30561159

Peptides detected in this lncRNA

>peptide 1 (32 aa)
MKYECPRLSLLIITPIPKANRIGSKSYDVIPC*

>peptide 2 (30 aa)
MMRRRHEGRAIRRVIMNHQSNGQSPRRPFI*

>peptide 3 (44 aa)
MLSQLFVFHKSKNFTSDYEIRMPPTVPVNHYSDPEGQQNRIEIL*

>peptide 4 (41 aa)
MSPVLLFIVTTSPCQDWVICAPAAFLGCGSRFSGSLSGIEP*

>peptide 5 (44 aa)
MHPFQKSGFVARISSRITTVIRVANTIKQTITDLMSHSQFHSLN*

>peptide 6 (30 aa)
APPTKNGHAPPPIETRKSSQSVNPYYVWTW*

Sequence

>CNT30561159
GCTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAAACAAGAAAGAGCTCTCAGTCTGTCAATCCTTACTATGTCTGGACCTGGTAAGTTTCCC
CGTGTTGAGTCAAATTAAGCCGCAGGCTCCACTCCTGGTGGTGCCCTTCCGTCAATTCCTTTAAGTTTCAGCCTTGCGACCATACTCCCCCCGGAACCCA
AAAACTTTGATTTCTCATAAGGTGCCAGCGGAGTCCTAAAAGTAACATCCGCTGATCCCTGGTCGGCATCGTTTATGGTTGAGACTAGGACGGTATCTGA
TCGTCTTCGAGCCCCCAACTTTCGTTCTTGATTAATGAAAACATCCTTGGCAAATGCTTTCGCAGTTGTTCGTCTTTCATAAATCCAAGAATTTCACCTC
TGACTATGAAATACGAATGCCCCCGACTGTCCCTGTTAATCATTACTCCGATCCCGAAGGCCAACAGAATAGGATCGAAATCCTATGATGTTATCCCATG
CTAATGTATCCAGAGCGTAGGCTTGCTTTGAGCACTCTAATTTCTTCAAAGTAACAGCGCCGGAGGCACGACCCGGCCAGTTAAGGCTAGGAGCGCATCG
CCGGCAGAAGGGACGAGACGACCGGTGCACACCTGAAGGCGGACCGGTCGGCCCAACCCAAAATCCAACTACGAGCTTTTTAACTGCAACAACTTAAATA
TACGCTATTGGAGCTGGAATTACCGCGGCTGCTGGCACCAGACTTGCCCTCCAATGGATCCTCGTTAAGGGATTTAGATTGTACTCATTCCAATTACCAG
ACTCAATGAGCCCGGTATTGTTATTTATTGTCACTACCTCCCCGTGTCAGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTT
CTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCTCCGTCACCCGTTAACACCATAGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTT
GAATGATGCGTCGCCGGCACGAAGGCCGTGCGATCCGTCGAGTTATCATGAATCATCAGAGCAACGGGCAAAGCCCGCGTCGACCTTTTATCTAATAAAT
GCATCCCTTCCAGAAGTCGGGGTTTGTTGCACGTATTAGCTCTAGAATTACTACGGTTATCCGAGTAGCAAATACCATCAAACAAACTATAACTGATTTA
ATGAGCCATTCGCAGTTTCACAGTCTGAATTAGTTCATACTTACACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAGGATCAACCAGG
TAGCATTCCTTTGCGACGTTGGCACCGCATGAGCCTAGCCGAGCAATCGGATAGGTCAAAGACGAGCACAACAGTCTTCCAAATTAAGGGTCGAACGCTT
TACAGGTAAAAAGGTCAGAAGACCAATTTCCCTCAAAAGATTTCCGCATCCGAGAGCACGAGTAAAGCACCCATGAGCCATGCATGCAACTTC