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Detailed information on CNT30560985


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9FJF7|SAU22_ARATH, E-value = 4e-17

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30487885Actinidia chinensisOlea europaea25.8611.2684.18158forward
CNT30508399Actinidia chinensisSolanum lycopersicum19.9757.5583.61122forward
CNT3073315Actinidia chinensisBrassica juncea20.1316.9782.93123forward

Expression of CNT30560985

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MVYVPKQEEKNKGLEEQLKALPVKNVKVVLA

>peptide 2 (34 aa)
MYQVSCIIDHNPPNREARSTKISALQGMVRPPIG*

>peptide 3 (40 aa)
MTFVYKIVLAKVCIKCPVSLIIILPIEKRDQRKYLLCREW*

>peptide 4 (52 aa)
MKTDSSMILELQIASFRSLQRKLQNNPLEHLMLLKVLCLRPMKTVEGFVWRE*

Sequence

>CNT30560985
CAAGGACTAAGCGTAATATAAATTCAACGGAGAAAATGGGCAAGTAAACTTTACAAAGTTTATAGACTAAAAAAATCTATCTCATGAACTGAAGCATTTG
CCTTTAAATCTGAGAGAATGACATTAATTTCTATTTATAACATTCAATGACATTTGTTTACAAAATTGTGTTAGCTAAAGTATGTATCAAGTGTCCTGTA
TCATTGATCATAATCCTCCCAATCGAGAAGCGAGATCAACGAAAATATCTGCTCTGCAGGGAATGGTGAGACCACCCATTGGATAATCAAACCCAAATTC
TTCCTCAGATTGACTTAACAAGTCTTGGAATGAAGACTGACTCAAGTATGATATTGGAACTACAAATCGCTTCTTTTCGCTCTCTCCAACGTAAACTGCA
AAATAACCCTTTGGAACATCTAATGCTGCTGAAAGTGCTTTGCTTGCGGCCGATGAAGACCGTCGAAGGATTTGTTTGGCGTGAATAATACGAGGCATAC
GAATGGCCATTTTTTTCAATGGTTTATGTCCCTAAACAAGAGGAAAAGAATAAAGGTCTTGAGGAACAGTTGAAAGCTTTGCCAGTGAAGAATGTGAAGG
TTGTGTTGGCT