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Detailed information on CNT3056076


BLAST search results

BLAST vs Swiss-Prot:
sp|Q3BAI2|YCX91_PHAAO, E-value = 7e-12

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30670969Amborella trichopodaSetaria viridis39.3179.3292.93905reverse complement
CNT30641383Amborella trichopodaNymphaea colorata51.9138.2590.961195forward
CNT30550219Amborella trichopodaIpomoea triloba5227.5793.321197forward
CNT30702366Amborella trichopodaQuercus lobata38.7589.5692.83892reverse complement
CNT30378673Amborella trichopodaArabidopsis thaliana25.7247.4793.58592reverse complement
CNT30283003Amborella trichopodaChenopodium quinoa37.1489.5392.75855reverse complement
CNT3020470Amborella trichopodaCitrullus lanatus14.662.3494.35336reverse complement
CNT30730494Amborella trichopodaCorchorus capsularis10.7728.1881.05248forward
CNT30632346Amborella trichopodaVigna unguiculata5141.9793.11174forward
CNT30505560Amborella trichopodaNicotiana attenuata52.0454.1892.741198reverse complement
CNT30162096Amborella trichopodaPistacia vera5.4342.0996125reverse complement
CNT30185187Amborella trichopodaSecale cereale5133.1992.671174forward
CNT30299053Amborella trichopodaTriticum aestivum50.9632.7492.581173forward
CNT30221833Amborella trichopodaHordeum vulgare35.459.7191.41815forward
CNT30401406Amborella trichopodaTriticum turgidum51.0440.1492.771175forward
CNT30569655Amborella trichopodaActinidia chinensis50.732.7792.81167forward
CNT30543278Amborella trichopodaBrassica napus31.5426.8991.87726forward
CNT30508923Amborella trichopodaSolanum lycopersicum13.0890.1294.68301forward
CNT30554477Amborella trichopodaOryza glaberrima14.9447.5894.19344reverse complement
CNT30147396Amborella trichopodaMedicago truncatula50.5639.1393.131164forward
CNT30438197Amborella trichopodaAegilops tauschii39.787.392.67914forward
CNT30245388Amborella trichopodaAvena sativa13.9492.7794.7321reverse complement
CNT30660235Amborella trichopodaTriticum dicoccoides40.3698.7292.47929reverse complement
CNT30140161Amborella trichopodaLolium perenne5134.4993.021174forward
CNT3017954Amborella trichopodaZea mays51.331.1792.131181forward
CNT30605146Amborella trichopodaGossypium raimondii44.6667.3293.191028reverse complement
CNT30718256Amborella trichopodaMalus domestica golden11.3885.6287.4262forward
CNT30682011Amborella trichopodaTriticum urartu39.6693.6492.66913forward
CNT30721631Amborella trichopodaTriticum spelta5133.892.51174forward
CNT30346087Amborella trichopodaEragrostis tef29.7166.1593.71684forward
CNT30595568Amborella trichopodaOryza meridionalis5.6533.5192.31130reverse complement
CNT30359771Amborella trichopodaLactuca sativa34.8876.8493.4803forward
CNT30429739Amborella trichopodaPapaver somniferum50.736.2889.371167forward
CNT30644906Amborella trichopodaCannabis sativa9.1765.9486.73211reverse complement
CNT30320583Amborella trichopodaAsparagus officinalis11.624.3493.63267forward
CNT3038324Amborella trichopodaCucumis melo5162.2592.161174reverse complement
CNT30331625Amborella trichopodaDioscorea rotundata10.1773.5890.17234forward
CNT3099471Amborella trichopodaOryza rufipogon8.375.7991.1191reverse complement
CNT30499372Amborella trichopodaDigitaria exilis5134.5493.021174forward
CNT30603680Amborella trichopodaOryza punctata5129.7492.931174forward
CNT30557400Amborella trichopodaPanicum hallii51.8787.0389.531194forward
CNT3039925Amborella trichopodaMarchantia polymorpha14.0765.3289.51324forward

Expression of CNT3056076

Peptides detected in this lncRNA

>peptide 1 (47 aa)
MLNTSQDKLPSSLKALASLPLMSLTLSMVIERTSNGTHRPQSFMKASH

>peptide 2 (30 aa)
MRGVYISLVTRCLKHWKSFSIQVLIRGFLT*

Sequence

>CNT3056076
GATGTTCGTTTTGACAGCAAAAAGCCCTGGCAATAGTTTGACCTTGCTACGTGGAGTAGACTGAACGAGATAGGCGGACACTTTGAGTTATCTAAAGGCA
AAGACTCGGCCCAACGGGCGCTCTTTCCCATAGGTGAGCTCCAGCTCCGCGCACTTGCTAACACCTTTATAAGCACTTTCTAGTGTGAACCCTTCGGTCG
CCTTTCTCATTTCAGTGCTCGCCTTTTGAATCTTCAGTAGGGACCTTTAGTCTTAGAATAGGGGTCGTGAGAGAGCAGAGCGTAAGTTGTCATAGTCATA
AAGGCTTTCAACTTCCAGGAAAAAACTTCAAATTGGGAGGGCGATCCTCCCGGTGAACTGACTGTACCCCAAACTGACTTAGGTGAACAAGTTGAGTATA
CTAGGGCGCTTGAGAGAACCATGTCAAAGGAACTCGGCAAAATGACCCTGTAAGTTCAGGATAAGGGGTGCTCTCCTATCTTTTGATTAGGAAAGCGGAA
CATACCATGGGGTAGCGACTGTTTATTAAAAACACAGTACTCTTCTAAGTGGTAACACGATGTATAGAGTCTGACACTGCCCGGTGCCAGAAGGTCGAAA
GGAGAAGTCTTATAAGCTTTGACTGAAAGCCCCGGTAAACGGCGGCAGTGACTCTAACTGTCCTAAGGTAGCAAAATTCCTTGTCGCATAAGTAGCGACC
TGCACGAATGGTGCAACGACTACCTCGCTGTCTTCGACATGGACCCGGTGAAATTGAATTCTCCGTGAAGATGCGAAGTACCAACGGCTAGACGGTAAGA
CCCCGTGCACCTTGACTATAGCTTCGCAGTGACAACCTTGATCGAATGTGTAGGATAGGTGGGAGGTGGTGACACAGATCTCCCAATTCTGAAAGACCAC
TCTTTCGTCTAAGGATGCCTAACCGCCGCACCGATCATTCGGGGAGGGGGAACACTACGAGGTGGGTAGTTTATCTAAGGCGGATGCCTCTTCAAGAGTA
ACGGAGGTGTACGAAGGTAGGCTCAAGCTAAGATTATGCTCATGAGCGTAATGGTATAAGCATGTCTGACTGTGAGATAGGCTGGTCGAACAGAGACGAA
AGTCGGCCATAGTGATTCGGGAGTCCCGTGTGGAAGGGCTCTCGCTCAATGGATCAAAGGTACACCAGGGATAACAGCTGATAACTCCCAAGAGCTCTTA
TCGACGGAGTCGTTTGGCACCTTGATGTCGACTCATCACATCCTGGGGTTGAAGAAGGTCCCAAGGGTTCGGTTGTTCGCCGATTAAAGTGGTACGTGAG
TTGGGTTTAGAATGTCATGGGACAGTTCGGTTTCTATCTGCCATTGGTGTTAAAGGGAGAACTGCAAGGAGCCAAACCTATTACGAGAGGATTGGGTTAG
ACGAACCTATGATGTACTGGTTGTTATGCCAATAGCAGCGCCGGGCAGCTAAGTTGGTATGCAAGAACTGTTGCGCCGCATCTGAGCTGAGCCATAGACT
CACTCTCAAAGCAATGAGAGGAGTTTACATCAGTTTAGTCACTCGTTGTCTTAAACATTGGAAATCCTTCTCTATACAAGTACTCATACGAGGTTTTTTA
ACATAACTTCGATAGGCGAGAGGTGTAAGCACCGCGAGGAGTGAAGCGATCTCGTACTAAACGAAACTACTTTCTCTTTAGGGGGTGGGGGCTTTTTGAC
AAAGAAGATAATAGGGGGAAGAGGAATCAACGAGGAATCAAGGAAATAGCGAAGGAGAAGGAAAGGCAAGTGATTGAATGAGCGGTGGGAATAGTGAAAC
AAAGAGAAGGAGAACAAGTAGGGTAGAGTAATTGGTCAACTCATCAGGCTCATAATATGAGAATTACAGGTTCGAATCCTGTCCCCGCCTAATCAAGGTG
ACACTCTACTACTGAGTTATATCCGTTCCCCGCCCCTATCGAGAAATAGAACTGACTACAAAAGTCGAGCCCGCGACCCTTATGTACTCAATGAGGGTGG
GGTATGCCGCTCGGGGAGACACGGGTGAAGTCGTCACAAGGTAGTCGTAGGGGAATGTGTGGCTAGATTGAATCCCCTACCTGACCGAAGAAGCGAGAAC
TGCTATCATATAGTCCGCTAAGTAATTCGAGTGTGCTCATTGCGGAATCTCGCTATATGCTTAACACAAGCCAGGATAAGCTTCCATCGAGTCTGAAAGC
CCTCGCGTCTCTTCCATTAATGAGCTTAACACTCTCTATGGTGATTGAACGGACATCGAACGGAACCCACCGCCCACAGAGCTTTATGAAAGCTAGTCAC
CG