Detailed information on CNT30560521


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30675843Actinidia chinensisSetaria viridis21.5636.8288.39155forward
CNT30378101Actinidia chinensisArabidopsis thaliana65.2353.1782.3469forward
CNT30282434Actinidia chinensisChenopodium quinoa43.1212.6381.61310forward
CNT3019970Actinidia chinensisCitrullus lanatus32.4176.6485.41233forward
CNT30381504Actinidia chinensisManihot esculenta64.3954.0385.96463forward
CNT30402788Actinidia chinensisBeta vulgaris47.0126.8782.84338forward
CNT30631057Actinidia chinensisVigna unguiculata61.251.784.77440forward
CNT30711421Actinidia chinensisGlycine max25.7364.4683.78185forward
CNT30158908Actinidia chinensisPistacia vera34.3515.1282.59247forward
CNT30636154Actinidia chinensisCapsicum annuum27.8243.2985.5200forward
CNT30298225Actinidia chinensisTriticum aestivum53.9650.7282.47388forward
CNT30394033Actinidia chinensisTriticum turgidum64.8134.4483.26466forward
CNT30554643Actinidia chinensisOryza glaberrima13.3520.2184.3896forward
CNT30314068Actinidia chinensisCamelina sativa61.0628.9681.55439forward
CNT3082269Actinidia chinensisBrassica juncea35.4739.3583.92255forward
CNT30652736Actinidia chinensisRosa chinensis33.141.1183.19238forward
CNT30625276Actinidia chinensisDaucus carota64.3932.9382.07463forward
CNT30477326Actinidia chinensisArabidopsis halleri52.4342.6585.15377forward
CNT30362636Actinidia chinensisSorghum bicolor31.1524.0186.16224forward
CNT3055928Actinidia chinensisAmborella trichopoda21.717.7784.62156forward
CNT30323609Actinidia chinensisAsparagus officinalis61.0626.3782.46439forward
CNT30103353Actinidia chinensisOryza rufipogon52.1637.3582.13375forward
CNT30113681Actinidia chinensisFicus carica31.5731.1881.06227forward
CNT30724231Actinidia chinensisLupinus angustifolius7.7922.5889.2956forward

Expression of CNT30560521

Peptides detected in this lncRNA

>peptide 1 (40 aa)
LHVGSPTIFSSHQTTRRVNHTIRHDHLLDFVPQNILDHLA*

>peptide 2 (90 aa)
SMLAVQPYSPVTKQHGESTTRSDTTTFSILSPKTSLITLHRPSNFSFRASFFCFSSSLSSISDLPWLQRPVSFLQIPSIDPRHIHQWHQP*

>peptide 3 (34 aa)
MLRGRSSESTIPLTKLRYSGINSSQLSMMKTRRT*

>peptide 4 (36 aa)
SPCWQSNHILQSPNNTESQPHDPTRPPSRFCPPKHP*

Sequence

>CNT30560521
TCTCCATGTTGGCAGTCCAACCATATTCTCCAGTCACCAAACAACACGGAGAGTCAACCACACGATCCGACACGACCACCTTCTCGATTTTGTCCCCCAA
AACATCCTTGATCACCTTGCATAGACCCTCAAACTTCTCCTTCAGAGCTTCCTTTTTCTGCTTCTCATCTTCACTCTCATCGATTTCAGACCTTCCTTGG
TTGCAGAGACCAGTTTCTTTCCTTCAAATTCCTTCAATTGACCCACGGCATATTCATCAATGGCATCAACCATGAAGAGGACCTCATAGCCCCTCTTCTT
CAGCTTCTCGAGGAACGGAGAGTTTTCAACAGCCTTCCTGGATTCACCAGTTATGTAGTAGATGTCATTCTGGCCCTCCTTCATCCTGGTCACGTAGTCC
TTGAGGCTAGTCATCTCATCACCACTCTTGGTGGAGTGATATCGAAGCAGTTCAGCAATCTTGGTTCTTAGAGAAGGCCTCGTAAAACTTGGTGTAGTCT
TCCTTGTTCTCAGCAATCTCAAAGAAGAGCTCAATGCACTTCTTGACTAAGTTCTTGCGAATTACCTTGAGGATTTTGTTCTGTTGAAGCATCTCTCTTG
AGATGTTAAGAGGGAGGTCCTCAGAATCCACAATACCCTTGACAAAACTCAGGTACTCAGGGATCAACTCCTCACAATTATCCATGATGAAAACACGGCG
AACGTAAAGTTTGATGTTG