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Detailed information on CNT30560520


BLAST search results

BLAST vs Swiss-Prot:
sp|P55737|HS902_ARATH, E-value = 6e-40

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695840Actinidia chinensisOryza sativa35.9616.5784.21114forward
CNT30187559Actinidia chinensisSecale cereale35.9617.0985.09114forward
CNT30441217Actinidia chinensisAegilops tauschii53.9423.0184.21171forward
CNT304322Actinidia chinensisZea mays54.8930.4785.06174forward
CNT30227528Actinidia chinensisAnanas comosus32.1814.0386.27102forward
CNT30352420Actinidia chinensisEragrostis tef63.0932.3181200forward
CNT30370845Actinidia chinensisOryza glumipatula29.0216.7383.792forward
CNT3055965Actinidia chinensisAmborella trichopoda52.0518.9982.42165forward
CNT30577638Actinidia chinensisOryza barthii53.9426.3983.63171forward

Expression of CNT30560520

Peptides detected in this lncRNA

>peptide 1 (71 aa)
SLKACAFMILSMLAVQPYSPVTKQHGESTTRSDTTTFSILSPKTSLITLHRPSNFSFRASFFCFSSSLSSR*

>peptide 2 (50 aa)
VPQSLRLHDSLHVGSPTIFSSHQTTRRVNHTIRHDHLLDFVPQNILDHLA*

Sequence

>CNT30560520
GTCCCTCAAAGCCTGCGCCTTCATGATTCTCTCCATGTTGGCAGTCCAACCATATTCTCCAGTCACCAAACAACACGGAGAGTCAACCACACGATCCGAC
ACGACCACCTTCTCGATTTTGTCCCCCAAAACATCCTTGATCACCTTGCATAGACCCTCAAACTTCTCCTTCAGAGCTTCCTTTTTCTGCTTCTCATCTT
CACTCTCATCGAGGTAACACGAAACCTAAACTGACAGAAACTCCAAGAAACAAACCACCACTTACCAAGGCAGAATCGAATCCTCTAAAGAAGGGGAATA
GTAATTTAATCAACCTC