« Back to Actinidia chinensis search


Detailed information on CNT30560479


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30673433Actinidia chinensisSetaria viridis9.8821.0582.69104forward
CNT30640069Actinidia chinensisNymphaea colorata17.7637.8581.28187forward
CNT30516978Actinidia chinensisJuglans regia19.0929.4784.08201forward
CNT30376279Actinidia chinensisArabidopsis thaliana13.1123.1583.33138forward
CNT30712288Actinidia chinensisGlycine max15.5728.4285.37164forward
CNT30635301Actinidia chinensisCapsicum annuum21.6557.4381.58228forward
CNT3075006Actinidia chinensisBrassica juncea12.9230.2281.62136forward
CNT30614377Actinidia chinensisArabis alpina10.6443.2485.71112forward
CNT30454500Actinidia chinensisSaccharum spontaneum10.0729.2884.91106forward
CNT30344813Actinidia chinensisEragrostis tef10.4521.0383.64110forward
CNT30620323Actinidia chinensisCajanus cajan20.712.283.94218forward
CNT30359901Actinidia chinensisLactuca sativa22.5134.9680.59237forward
CNT30483616Actinidia chinensisChara braunii10.4527.581.82110forward
CNT30644515Actinidia chinensisCannabis sativa20.737.7282.11218forward
CNT3027985Actinidia chinensisTheobroma cacao13.5826.3483.92143forward
CNT30578384Actinidia chinensisOryza barthii9.8826.5384.62104forward
CNT30557050Actinidia chinensisPanicum hallii9.8827.3784.62104forward
CNT30112090Actinidia chinensisFicus carica20.6110.682.49217forward
CNT30725036Actinidia chinensisLupinus angustifolius13.1121.4384.78138forward
CNT3049140Actinidia chinensisCucumis sativus17.6658.3179.03186forward

Expression of CNT30560479

Peptides detected in this lncRNA

>peptide 1 (80 aa)
MPPKKNPPVNLAHPSAVWSWSGSFFLPVRVSAGAVDGSPSLNDATPYMVRQMLRITTRPGDWRGTKQLKGSMSPGSRGFQ*

Sequence

>CNT30560479
CATACATTAGCATCACAAATCATCCTTGAAGTGATTTAGTCCCCCAATATACAAGTTTTTTCTAAATGGGCCAGGCCCAATCCACAAAAAGCCCACTTAC
TTAACATAGTAAGGAAGGTCCAAGACATATAGGAGGAAGTAGGCCCAAAGGACCCCAGAGATGCCACCAAAGAAGAACCCACCCGTGAACTTGGCCCACC
CATCAGCAGTCTGGAGCTGGTCCGGCTCCTTCTTCCTCCCAGTCAGGGTCAGTGCGGGTGCAGTGGATGGCTCACCCTCTTTGAACGATGCAACCCCATA
CATGGTCAGACAAATGCTTAGGATAACCACGAGGCCGGGAGATTGGAGAGGTACCAAGCAATTAAAGGGCTCGATGTCACCGGGGTCTCGAGGCTTCCAA
TGAATGGATCCCCGTTGATGGGCTGGATCACTTGGTAAGTGGGCTGCACCAAATTGAGGAAAGAAACATATCCCACATAGATCAATTCAAGCATTAGTTA
ATGACCACCAATACAGGTAAGAACGATACCCTACACACACAAACGCAAAAATGGTAATATTTCAATTGTGGTTGGTGGAACAAGTCTTTCCTTCTTTAAT
GGAACCTATTGATAAACACAAGGATTTTAAATAACTGTATCAGTATCACTAATACGGTCATGCATAAACCAACATCAGATCAAATCGGCGACCATATTTC
TGATATGCAATGGGTCGTGCATAAACCAACATCAGATTAAATCCGCGACCACATTTTCGATGTAATAGCCAACAATAACGTATCGTCTAATATTTAAAAC
CTAGATAAACACTCCCTCTCCTTAATCCTTACCTTATCTGTCTGAACTGCTTTGACGGTGAAAGATGGCCTCTTGCAGGGCAACCCTCTCAATGGGGTAG
ATCCAGAGAGGCCTTTGGGGGCAACTAGTCCCCTTGTTAGTGACGTGGCAAAGCTGCTCCTGAGCTGCTGGCTTGCCATTGTTGAAGCAGTGGCTGCCAT
GGTTACTTTCCTTTTTTTTCTTAGAGAGAGAAGACCCTTTAGGACTGACTAAG