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Detailed information on CNT30560303


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9FF29|PR5K_ARATH, E-value = 3e-118

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30402810Actinidia chinensisBeta vulgaris7.5226.284.9593forward
CNT30167335Actinidia chinensisPistacia vera24.0921.979.19298forward
CNT3099214Actinidia chinensisSolanum tuberosum13.539.0282.04167forward

Expression of CNT30560303

Peptides detected in this lncRNA

>peptide 1 (79 aa)
MRALLCPSKQKPKRVTTLTCEVLLMLVTSLINSAPSPFDSFRTFTAMGSPFCNFPLYTSPYPPRPSFSLKELVIFFTSE*

>peptide 2 (37 aa)
MVPLIPNMATILSFLGHSLARPKSEIFGQKSSSRRMF*

>peptide 3 (45 aa)
MHQKPTIIIFLALSFCSLVITPRCPISLSISRCLYIQSRKYSSLV*

>peptide 4 (35 aa)
MQNSSVTTTVQVLESSGNANCNLVECFPPQLTLLR*

Sequence

>CNT30560303
AAAAGAACAATTGACATCAACCAGCCATTCAGCTAGTTTACGGTAACAGATAGAAATACCTACTACAGAAGCAGAAGAAGAAAAAAGCAACAAACTTGCC
TTTTCAAGAACGATTTCATTAACATGAATTAGAGGAGTGTGATAATAAATTATCTGTGGCTGAAGAATCTGCAGCCAGTGCTCTTGGGGGGGAAGACAAG
GCCGGCCTAGCTGGGATTTGTAAGGTTTCCAGGCTTCCTTCTAACATACCCACCACTCGACTCATCGAAGGCCGACTTGAAGGATCTGTTTGTATGCACC
AAAAGCCAACTATCATCATCTTTCTTGCTCTTTCATTTTGCTCTTTGGTCATAACACCACGTTGCCCAATTTCTTTATCCATTTCAAGATGCCTGTATAT
CCAATCCAGAAAATATAGTTCACTGGTATGATCAACTCCAACATCAACATTGTTTTTCCCTCCAACCATATTTAAAATCATCATACCATAGCTATAGACG
TCCGATTTATGAGAAATACCTCCAAAGTTTCTAGAAAATACTTCTGGAGCAATATAACCAATGGTCCCTCTCATCCCTAACATGGCCACGATACTCTCTT
TCTTAGGGCATAGCTTAGCAAGGCCAAAATCAGAAATCTTTGGGCAGAAATCTTCGTCTAGGAGAATGTTCTGAGGCTTTATGTCGAAATGCAAAATTCT
AGTGTTACAACCACGGTGCAAGTACTCGAGTCCTCGGGCAATGCCAATTGCAATTTGGTAGAGTGTTTCCCACCCCAATTGACGCTCCTCCGTTGATGAA
TTATCATTAGATATGAACTTGTCGAGTGATCCATTAGGCATGAACTCGTAGATGAGAGCTCTCTTGTGTCCCTCGAAACAAAAACCCAAAAGAGTGACGA
CGTTAACGTGTGAAGTCCTGCTAATGCTTGTGACCTCGTTAATAAATTCTGCGCCATCACCTTTTGATTCGTTTAGGACCTTCACCGCAATGGGTTCTCC
ATTTTGCAATTTTCCTTTGTACACTTCGCCATATCCTCCCCGGCCTAGTTTCTCTTTGAAGGAGTTGGTCATTTTCTTTACATCTGAATAACTGTATCGT
TTTGGAGCAAGAGGCCCGCAGTTCTTCAGAATGGCCTCGATTTTTTGATTGATATCGCTTCCCTTCTTCCAAAAGATCATTGATTTTCCTGACGTGCGTC
TCCTATACCACAAGATCAACAGCATTAAACCCATCAA