Detailed information on CNT30560302


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9FF29|PR5K_ARATH, E-value = 4e-119

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30514610Actinidia chinensisJuglans regia20.1417.8982.54252forward
CNT30379990Actinidia chinensisManihot esculenta23.6673.2781.42296forward
CNT30704506Actinidia chinensisPrunus avium10.9530.2481.75137forward

Expression of CNT30560302

Peptides detected in this lncRNA

>peptide 1 (35 aa)
SISFPKLSVYHEMANSCNTWTKEQLTSTSHSASLR*

>peptide 2 (79 aa)
MRALLCPSKQKPKRVTTLTCEVLLMLVTSLINSAPSPFDSFRTFTAMGSPFCNFPLYTSPYPPRPSFSLKELVIFFTSE*

>peptide 3 (45 aa)
MHHKPTIIIFLVLSFCSSVITPHCPISLSISRCLYIQSGKYSSLV*

>peptide 4 (44 aa)
MCLYAPQANYHHLSCSFILLFGHNTALPNFFIHFKMPVYPIRKI*

>peptide 5 (37 aa)
MVPLIPNMDTILSFLGHSLARPKSEIFGQKSSSRRML*

Sequence

>CNT30560302
CTTCTATTTCCTTTCCAAAGTTATCTGTTTATCATGAAATGGCTAATAGCTGCAATACTTGGACAAAAGAACAATTGACATCAACCAGCCATTCAGCTAG
TTTACGGTAACAGATAGAAATACCTACTACAGAAGCAGAAGAAGAAAAAAGCAACAAACTTGCCTTTTCAAGAACGATTTCATTAACATGAATTAGAGGA
GTGTGATAATAAATTATCTGTGGCTGAAGAATCTGCAGCCAGTGCTCTTGGGGGGGAAGACAAGGCCGGCCTAGCTGGGATTTGTAAGGTTTCTAGGCTT
CCTTCTAACATACCCACCACTCGACTCATCGAAGGCCGACTTGAAGGATGTGTTTGTATGCACCACAAGCCAACTATCATCATCTTTCTTGTTCTTTCAT
TTTGCTCTTCGGTCATAACACCGCATTGCCCAATTTCTTTATCCATTTCAAGATGCCTGTATATCCAATCCGGAAAATATAGTTCACTGGTATGATCAAC
TCCAACATCAACATTGTTTTTCCCTCCAACCATATCTAAAATCATCATTCCATAGCTATAGACGTCTGACTTGTGAGAGACCCTTCCAAAGTTTCTAGAA
TATACTTCCGGAGCAATATAACCGATGGTCCCTCTCATCCCTAACATGGATACGATACTCTCTTTCTTAGGGCATAGCTTAGCAAGGCCAAAATCAGAAA
TCTTTGGGCAAAAGTCTTCGTCTAGGAGAATGTTGTGAGGCTTTATGTCGAAATGCAAAATTCTCGTGTTACAACCACGGTGCAAGTACTCTAGTCCTCG
GGCAATGCCAATTGCAATTTGGTAGAGTGTTTTCCACCCCAATTGACGCTCCTCCGTTGATGAATTATCATTAGATATGAACTTGTCGAGTGATCCATTA
GGCATGAACTCGTAGATGAGAGCTCTCTTGTGTCCCTCGAAACAAAAACCCAAAAGAGTGACGACGTTAACGTGTGAAGTCCTGCTAATGCTTGTGACCT
CGTTAATAAATTCTGCGCCATCACCTTTTGATTCGTTTAGGACCTTCACCGCAATGGGTTCTCCATTTTGCAATTTTCCTTTGTACACTTCGCCATATCC
TCCCCGGCCTAGTTTCTCTTTGAAGGAGTTGGTCATTTTCTTTACATCTGAATAACTGTATCGTTTTGGAGCAAGAGGCCCGCAGTTCTTCAGAATGGCC
TCGATTTTTTGATTGATATCGCTTCCCTTCTTCCAAAAGATCATTGATTTT