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Detailed information on CNT30560220


BLAST search results

BLAST vs Swiss-Prot:
sp|Q6L399|PSAB_SACHY, E-value = 0.0

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30678731Actinidia chinensisSetaria viridis19.6188.6691.48305forward
CNT30526965Actinidia chinensisEucalyptus grandis8.4961.493.94132reverse complement
CNT30617597Actinidia chinensisSesamum indicum20.930.1297.23325forward
CNT30202037Actinidia chinensisPisum sativum40.8419.5193.86635forward
CNT30226544Actinidia chinensisHordeum vulgare8.0421.788.8125forward
CNT30232496Actinidia chinensisAnanas comosus21.745789.94338forward
CNT30205718Actinidia chinensisHelianthus annuus23.2889.689.78362forward
CNT30682212Actinidia chinensisTriticum urartu48.2322.7591.33750forward
CNT30484006Actinidia chinensisChara braunii14.4161.7181.7224forward
CNT30430934Actinidia chinensisPapaver somniferum39.689.4495.46617forward
CNT3051926Actinidia chinensisAmborella trichopoda46.0550.4690.22716forward
CNT3024232Actinidia chinensisPopulus trichocarpa12.4894.6385.57194forward
CNT30585620Actinidia chinensisEchinochloa crusgalli48.2314.6291.87750forward
CNT30496729Actinidia chinensisDigitaria exilis14.2121.7392.31221forward

Expression of CNT30560220

Peptides detected in this lncRNA

>peptide 1 (73 aa)
MFRKFKLLELGSIKTRLKLVHLINNPSLNIFLKLLRFPIKHEFVYQPFYPHSCFFFFMFFCVGSGVAPGNKHA*

>peptide 2 (40 aa)
MIFLFQFFPFLLPLNQTFLCHNGSVPISIHDTSRILDVEI*

>peptide 3 (36 aa)
MRHIVGSVCRKKKHYYELSALCDSMHVALSSFSHCD*

>peptide 4 (49 aa)
MNLFISHSIPIVVSFSLCFSVLAVGLPLATNMHEPFHAVYVRIVQSLDS*

>peptide 5 (45 aa)
MRPKPKYHKYRLVPGHHKENYNRNLFYLALTWNRVHLKHLLLRSM*

Sequence

>CNT30560220
TAATGTTTAGAAAATTCAAGCTACTCGAGCTCGGCTCGATTAAAACTCGTTTGAAATTGGTTCATTTGATAAACAACCCAAGCTTGAACATATTTTTAAA
ACTCCTTAGGTTTCCAATCAAGCATGAATTTGTTTATCAGCCATTCTATCCCCATAGTTGTTTCTTTTTCTTTATGTTTTTCTGTGTTGGCAGTGGGGTT
GCCCCTGGCAACAAACATGCATGAACCATTTCACGCAGTATATGTCCGGATAGTCCAAAGTCTCGATAGTTAGCTCTCGGTCTTCCGGTCAAAAAACAAC
GTCGATGAAGGCGTGTAGGTGCACTATTCCGCGGTGGGGATTGTAACTTTCCATGAATTTCCCATTTGTCACTCACCGAATTAACTTTACTTATTTCTTT
TTTTGAGGATCGACGAATCAAATGATATTTCTGTTCCAATTTTTTCCTTTTCTTCTCCCTCTGAATCAAACTTTTCTTTGCCATAATGGTTCAGTTCCTA
TTAGTATCCATGATACAAGTCGGATCCTAGATGTAGAAATATAAGAAAGTAGACCTCCTCCCCATCAAAAGAAATGAGATTATCACGGATATAACACACT
CAAAAATTTAACCAAATTTACCCGATGTAGAGGCAATCAAGAAAGCTGCGTAAGTAAATATATAACCTACAGAAAAGTGGGCTAATCCAACCAATCTTGC
TTGGACAATAGAAAGTGCCACTGGTTTATCTCTCCACCGAATCAAATTGGCCAAAGGTGTGCGTTCGTGAGCCCATGCTAAAGTTTCAATCAATTCCTGC
CAATATCCACGCCAGGAAATTAAGAACATAAATCCAGTAGCCCAAACAAGATGTCCAAATAAGAACATCCACGCCCAGACCGATAAACTATTCATACCAA
AAGGGTTATATCCATTGATAAGTTGGGAAGAGTTTAACCATAAATAATCTCTTAACCATCCCATCAAATAAGTGGAAGATTCATTAAACTGCGAAACGTT
ACCCTGCCATAATGTGATGTGCTTCCAATGCCAATAAAAAGTAACCCATCCAATGGTATTTAACATCCAGAAAACCGCCAAATAAAATGCGTCCCAAGCC
GAAATATCACAAGTACCGCCTCGTCCCGGGCCATCACAAGGAAAACTATAACCGAAATCTTTTTTATCTGGCATTAACTTGGAACCGCGTGCATCTAAAG
CACCTTTTACTAAGATCAATGTAGTTGTATGTAAACCTAGAGCAATAGCATGATGAACCAAAAAGTCTCCCGGACCTATTGTTAAGAATAGTGAATTACT
ATTCTCATTAACAGCATTTAACCAACCGGGCAACCATATGTTTCGACCCGCATTGAATGCCGGGTAAATGAGACACATTGTTGGTTCAGTATGTAGGAAA
AAGAAACACTATTATGAGTTGTCTGCTCTTTGTGATTCCATGCATGTTGCCTTATCCTCTTTTAGCCACTGCGATTAGTGCGGCTTTCTCGTAGTTATCG
TCACAAAGGCAAGACTTGTTTTCAAAATCCCTTTTTTCTACGATTTGTAGTTACA