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Detailed information on CNT30559962


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9C7S5|PSYR1_ARATH, E-value = 5e-96

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30279393Actinidia chinensisChenopodium quinoa25.217.2980.79151forward
CNT3021173Actinidia chinensisCitrullus lanatus56.5947.0879.35339forward
CNT30233824Actinidia chinensisBrassica oleracea33.2245.4380.9199forward
CNT30262985Actinidia chinensisBrassica rapa21.5440.1981.4129forward
CNT3066951Actinidia chinensisLeersia perrieri40.96.0179.59245forward
CNT30704500Actinidia chinensisPrunus avium61.949.4283.56371forward

Expression of CNT30559962

Peptides detected in this lncRNA

>peptide 1 (39 aa)
FVKYTYVLLLPFHFGGCPVAPIFWSQLTTSVIVGLFKGF*

>peptide 2 (60 aa)
MSMIRKNQSGQSKICNMCFKLVIKENVTGLDVTMHYMWFTDLVHVSQPVACSSCNPQSSWP

>peptide 3 (77 aa)
MQATSSNCLISSSKPLPLRRGSKTSSCFPSFLICCTQTTSSLDIFGLNNSIGLFPVRSSSMTTPKLYISPLKVAIHA*

>peptide 4 (85 aa)
FRKVYVCATLAFSFWWLPSSPYILEPVDHFCNCWPLQRVLIDTHAGNIKQLPHLFFKTLASQERIKDFILFSLIPHLLHPDNQFS*

Sequence

>CNT30559962
TTTCGTAAAGTATACGTATGTGCTACTCTTGCCTTTTCATTTTGGTGGCTGCCCAGTAGCCCCTATATTCTGGAGCCAGTTGACCACTTCTGTAATTGTT
GGCCTCTTCAAAGGGTTCTGATTGACACACATGCAGGCAACATCAAGCAACTGCCTCATCTCTTCTTCAAAACCCTTGCCTCTCAGGAGAGGATCAAAGA
CTTCATCTTGTTTTCCCTCATTCCTCATTTGCTGCACCCAGACAACCAGTTCTCTTGACATCTTTGGCTTGAATAACTCCATAGGTCTCTTCCCTGTCAG
AAGCTCAAGCATGACTACCCCAAAACTGTACATATCCCCTCTCAAAGTGGCTATCCATGCCTGACCATACTCCGGGGGAATGTAACCCAGAGTGCCAACC
AATTCAGTTGTGACATGAGTATGATAAGGAAGAATCAGTCGGGACAATCCAAAATCTGCAACATGTGCTTCAAACTTGTCATCAAGGAGAATGTTACTGG
ACTTGATGTCACGATGCACTATATGTGGTTCACAGACCTGGTGCATGTAAGCCAGCCCGTAGCTTGCTCCTCGTGCAATCCTCAGTCGAGTTGGCCAAT