« Back to Actinidia chinensis search


Detailed information on CNT30559952


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9SSA8|RA212_ARATH, E-value = 8e-42

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30641314Actinidia chinensisNymphaea colorata21.2315.3883.55152forward
CNT30516842Actinidia chinensisJuglans regia23.7431.3180.59170forward
CNT3090378Actinidia chinensisSolanum tuberosum17.631.982.54126forward
CNT30539789Actinidia chinensisBrassica napus23.4625.382.14168forward
CNT30475741Actinidia chinensisSaccharum spontaneum22.0730.3382.28158forward
CNT30232688Actinidia chinensisAnanas comosus17.0436.281.15122forward
CNT30686876Actinidia chinensisTriticum urartu14.825.1883.02106forward
CNT30368855Actinidia chinensisSorghum bicolor22.0723.281.01158forward
CNT3035635Actinidia chinensisCucumis melo18.8535.1683.7135forward
CNT30551639Actinidia chinensisOryza brachyantha25.5644.6379.78183forward

Expression of CNT30559952

Peptides detected in this lncRNA

>peptide 1 (90 aa)
HQRSKNPSSFHHLELHPHRGMCPLKHPSSPQDMGSERISFGIQTQRALRTVSSQNSLHQLKEEMIFLASFHYILPTRSQNNRKSYFLDLS*

Sequence

>CNT30559952
ATCATCAAAGATCCAAAAATCCATCGAGTTTCCACCATCTTGAGTTGCATCCCCACCGAGGAATGTGTCCACTGAAGCATCCCAGTTCCCCTCAAGATAT
GGGATCTGAAAGAATTTCATTTGGGATTCAAACTCAGAGAGCTCTTCGGACAGTTTCTTCCCAGAATTCTCTTCATCAGCTGAAAGAAGAGATGATATTT
CTGGCATCTTTCCATTATATTCTCCCCACTCGAAGTCAGAACAATCGAAAGAGTTACTTTCTTGATCTGAGTTGAAATAAAGGGTGGCACCATCAAATGG
GGTAAATGATTTGAGTCCAACCTCTTCGGGCATAGGGTAGGCATCTGTGAACCCATACTGCTTCGTCGGTGGCTTCTCTTCCACAAAACTCATGCTGTAG
TTGTCAGGATCTGGGTTGATGAAATTGAAATTTTGGTTTAGACGAGGTTGAACAGTGCTTGGGCTTTCCTTTGAAGGTAATTTCTGAGTATTTGCCTTGA
CGGTGCGTTTTGGGGTACTTGACGGAGCATCATCAGGGAAATTGATCTTAGCTTTTTTACCACGAATCTTCCGTGCCGCTGCATCATAGGCTCTAGCAGC
TTCCTCTGCAGTGTTGAAAGTTCCAAGCCACACCCGAACCCCTTTCCTTGGGTCACGGATCTCAGCAGCCCACTTACCCCATGGGCGTTGCCTAATTCCT
CTGTACTGATTCTTTT