Detailed information on CNT30559910


BLAST search results

BLAST vs Swiss-Prot:
sp|P49039|SUS2_SOLTU, E-value = 4e-34

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30678571Actinidia chinensisSetaria viridis66.0637.3184.72144forward
CNT3019911Actinidia chinensisCitrullus lanatus58.7219.8882.81128forward
CNT3061548Actinidia chinensisArabidopsis lyrata50.9213.5583.78111forward
CNT30141453Actinidia chinensisLolium perenne24.3116.7288.6853forward
CNT3026939Actinidia chinensisPopulus trichocarpa21.119.6693.4846forward
CNT30116122Actinidia chinensisOryza nivara66.0653.7382.64144forward

Expression of CNT30559910

Peptides detected in this lncRNA

>peptide 1 (35 aa)
QMVRFKPRMVQFRVELGQSLVLLSVREVDVHIGPR*

>peptide 2 (39 aa)
TDGSIQATDGSIQGGTWSVSCPSQCEGSRCSYRPPVRQC*

Sequence

>CNT30559910
GACAGATGGTTCGATTCAAGCCACGGATGGTTCAATTCAGGGTGGAACTTGGTCAGTCTCTTGTCCTTCTCAGTGTGAGGGAAGTAGATGTTCATATCGG
CCCCCGGTGAGACAATGTTGAATTTGGGGTCAAACACATCAATACCATGGACAACTCGGTAAAGTCCGGGCATAGTGAAGGCCATATGACTCTCATACTG
TCCAACGGTGTTCTTGCT