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Detailed information on CNT3055965


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30378101Amborella trichopodaArabidopsis thaliana24.7424.3886.05215forward
CNT30282434Amborella trichopodaChenopodium quinoa24.48.6480.19212forward
CNT30631186Amborella trichopodaVigna unguiculata24.8619.0684.26216forward
CNT30635894Amborella trichopodaCapsicum annuum13.3520.686.21116forward
CNT30187559Amborella trichopodaSecale cereale17.9523.3986.54156forward
CNT30298225Amborella trichopodaTriticum aestivum26.5830.286.15231forward
CNT30560520Amborella trichopodaActinidia chinensis18.9952.0582.42165forward
CNT30510308Amborella trichopodaSolanum lycopersicum11.2837.9883.6798forward
CNT30554643Amborella trichopodaOryza glaberrima11.2820.6386.7398forward
CNT30441217Amborella trichopodaAegilops tauschii25.229.4885.84219forward
CNT30314068Amborella trichopodaCamelina sativa24.7414.1885.58215forward
CNT304322Amborella trichopodaZea mays24.7437.6586.05215forward
CNT30227528Amborella trichopodaAnanas comosus17.8421.3285.16155forward
CNT30126131Amborella trichopodaCorymbia citriodora17.2626.2282.67150forward
CNT30352420Amborella trichopodaEragrostis tef24.7434.7386.51215forward
CNT30323609Amborella trichopodaAsparagus officinalis24.7412.9185.58215forward
CNT30103353Amborella trichopodaOryza rufipogon24.7421.4185.58215forward
CNT30577638Amborella trichopodaOryza barthii24.7433.1886.05215forward

Expression of CNT3055965

Peptides detected in this lncRNA

>peptide 1 (52 aa)
MILSMLAVHPYSPVTRQHGESTTRSETTTFSTLSPKMSLITLQSPSNLAMRLS

>peptide 2 (61 aa)
MLQYLKVIKIKKQNARASKMRPATTSLVDLLHLAALSINIFKRRHVRVLFCSSVILIDAQG*

>peptide 3 (33 aa)
MANISRSQIQRERIIGNSETYIHCQSKPTKTKT*

>peptide 4 (37 aa)
LYHRRVTIFITNFHFLQKKYSLKNTGRYSILAQLKFR*

Sequence

>CNT3055965
ATCTTTACCATAGAAGAGTAACAATCTTCATTACTAACTTCCATTTTTTGCAGAAAAAATACAGTTTGAAAAACACAGGTAGATATTCCATACTAGCACA
ACTGAAGTTTAGGTAGATATTCCATATTAGCACAACTGAAGCTTTTATTGTATCATTGTATCTTAAGAGTTGTAATTTTGTTGAAACAGCAAGTGGAAGA
GGGCATCCCATCCTCGCACCAGAGAAATGGCGAATATTTCAAGGTCGCAAATACAAAGAGAACGCATAATTGGAAACTCAGAAACATATATTCATTGTCA
AAGCAAACCTACTAAAACCAAAACATGAGTTCTACCGAAATATCTCAAAATCAGGTCCACATTAGGGAGAAATAAAATGAGTCATAAACTGAAACTACCA
CGTCTAAAGCTATAATTATCATCAAAATTAAAGCAATATTCCAGGAATCCGTTTTACCCATGCTTCAGTATTTAAAAGTAATAAAAATAAAAAAGCAAAA
CGCAAGAGCAAGCAAAATGCGTCCAGCCACCACAAGTTTAGTCGACCTCCTCCATCTTGCTGCCCTCAGCATCAATATCTTCAAGAGGAGGCATGTCAGA
GTCCTGTTCTGCAGCAGTGTCATCCTCATCGATGCTCAGGGTTGATCTCCATTGTCTTCTTGCTGGACATGTAGCCTGACATGTTGCTGTCCCTCAGGGC
CTGAGCTTTCATGATTCTTTCCATGTTGGCCGTCCACCCATACTCCCCAGTGACAAGGCAGCATGGGGAGTCCACCACACGGTCAGAGACCACCACCTTC
TCCACCTTGTCGCCCAAAATGTCCTTGATCACCTTGCAAAGCCCCTCAAACTTGGCCATGAGGCTTTCC